Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3808g00001 ATGTGGAGCATGGATCGGTACTGTGTTTGTGTTCCATTGTTCGTGTGCTTGGTATTGGCTATTGAGCTTGTTGTAGCACAGGATTTTAAGCCTACAGATAATATCCTGCTGGATTGTGGAGGTCCTCCATCCAGTACTGATACCGATGACCGTGTATGGACCACTGATGTTGGTTCCAAGTTTGGTTCCTCCTCTGAAAAATCCACCACCGTATCGCAGGCGGCAACTCAAGACCCTGCCGTCCCCCAGGTGCCCTACATGACGGCACGTGTGTTCCATGCCCCGTTTTCCTATGCTTTCCCGGTGGCTTCCGGTTGGAAGTTCCTCCGGCTGCACTTTTACTCCGCTTCTTACTCCAATCTCAATGCATCTGATGCCCTTTTTGCGGTGACGGCGAATTCATACACGCTTCTTAGGAACTTTAGTGTTGCTCAGACCACCCTTGCTTTGAATTATGCCTACATTTTGAAGGAATTTGCCATCCATGTAGATGGGAAGACCTTGAATGTGACTTTCACTCCTTCTACCAATGCATCCAATGCTTACGCGTTTGTCAATGGGATCGAGGTTGTGTCCATGCCTGATATTTATACTTCTACTGATGGAACTACCATGATAGTGGGTACAAATACTGCTTACACTATTGATAACAGCACTGCACTTGAGAATGTTTATAGGTTGAACGTGGGTGGGAATGATATCTCTCCCTCCCGTGATACTGGTATGTTTAGGTCATGGTCTGATGATGTTCCCTTCCTCTTTGGCGCTGCATTTGGAGTTACAGAGCCTGCTGATTCAAATGTGAAGTTTGAGTATCCTCCGGACACACCAAGTTATATTGCCCCACTTGATGTCTATACTACGGCCAGATCAATGGGCCCGAATCCGGAGATCAACACGAATTACAACTTGACTTGGATCTTCAACATTGATTCGGGGTTTTCCTATCTAGTGAGACTTCATTTTGCTGAGGTATCATCAAATATAACCAAGATTAATCAAAGAGTATTTGATATATTCCTCAATAATCAAACAGCTACTCCCCAGGCTGATGTTATTGCCTGGGCAAAAGATTCTGGCCTTTCACATTCTAATGGGGTGCCTGTGCATAAAGATTATGTTGTCTTTATACCCGATGCTAGAGAACCACGGCAGGACCTGTGGCTTGCATTGCATCCAGATCCAACTGACAAGCCCATGTATTATGATGCTATATTGAATGGAGTGGAGATATTCAAAATTAGTGATACTGCTGGAAATCTGGCAGGGACAAATCCTATTCCTGCCCCTGTGCAAGATATAATTGACCCGTCAAAAGCTAGAGCACATAATCATGGTAAATCAAAGAATCATACAGGTATAATTGCAGGAGGTGTTGTTGGAGGTGTTGTTGCAGTACTTGTTATTGGGCTATTTGCTTTTTCTGCTTCGCGTCGCCATAGGCAAGGAAAGGATTATGGTGCAAGTGAAGGGCCATCTGGCTGGCTTCCACTTTCTCTTTATGGTGGTACCTCACACTCTGCAGCTTCTGCCAAGACCAACACAACAGGAAGTTATGCTTCCTCTCTCCCATCAAACCTTTGTCGTCATTTCTCATTTGCTGAAATCAAGTCGGCCACAAACAACTTTGATGAGGCTTTGCTTCTTGGTGTTGGAGGATTCGGTAAGGTTTACAAGGGAGAAATTGATGGTGGAACAACCAAAGTTGCAATTAAACGTGGGAATCCACTTTCTGAGCAGGGGGTGCATGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCACCGCCACCTTGTTTCTCTGATTGGATACTGTGAAGAAAACACTGAAATGATCCTCGTTTATGATCATATGGCCTATGGAACACTCAGGGAGCATTTGTACAAGACCCAGAAACCTCCACTTCCATGGAAGCAAAGGCTTGAGATATGCATTGGAGCTGCTCGGGGTTTACACTATCTACACACTGGAGCTAAACACACAATCATCCACCGTGATGTGAAGACAACAAACATTTTACTGGATGAGAAATGGGTGGCCAAGGTTTCTGATTTTGGATTGTCAAAAACAGGTCCAACATTGGATAATACCCATGTAAGTACTGTGGTAAAGGGTAGCTTTGGGTACTTGGATCCAGAATACTTCAGGAGGCAGCAACTAACTGACAAATCTGATGTTTACTCATTTGGGGTGGTTCTCTTTGAGATATTATGTGCTCGTCCAGCTTTGAACCCAGCCCTTGCTAAGGAGCAAGTGAGTCTGGCTGAGTGGGCAGCTCATTGCTACCTGAAAGGCATTCTTGACCAAATCATTGATCCCTATCTAAAAGGCAAGATAGCTCCAGAATGCTTCAAGAAATTTGCCGAGACTGCGATGAAGTGCGTGGCTGACCAGGGTATTGAAAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCTTTGCAGCTGCAAGAAAGCGCAGAGGAAAGTGGCAACGGCTTTGGCGACATTCACAATGAAGAGGAGCCCACGTATACAGATTCTAAAGGAAAGAAAGATTCTGATGCGATGGGGGGTTATGATGGTAATGTGACTGACTCCAGAAGCAGTGGCATTTCAATGAGCATTGGAGGTAGAAGCTTGGCTAGTGAAGACTCTGATGGGTTAACCCCAAGTGCTGTGTTCTCCCAGATCATGAATCCAAAAGGCCGTTAA 2706 0.4505 MWSMDRYCVCVPLFVCLVLAIELVVAQDFKPTDNILLDCGGPPSSTDTDDRVWTTDVGSKFGSSSEKSTTVSQAATQDPAVPQVPYMTARVFHAPFSYAFPVASGWKFLRLHFYSASYSNLNASDALFAVTANSYTLLRNFSVAQTTLALNYAYILKEFAIHVDGKTLNVTFTPSTNASNAYAFVNGIEVVSMPDIYTSTDGTTMIVGTNTAYTIDNSTALENVYRLNVGGNDISPSRDTGMFRSWSDDVPFLFGAAFGVTEPADSNVKFEYPPDTPSYIAPLDVYTTARSMGPNPEINTNYNLTWIFNIDSGFSYLVRLHFAEVSSNITKINQRVFDIFLNNQTATPQADVIAWAKDSGLSHSNGVPVHKDYVVFIPDAREPRQDLWLALHPDPTDKPMYYDAILNGVEIFKISDTAGNLAGTNPIPAPVQDIIDPSKARAHNHGKSKNHTGIIAGGVVGGVVAVLVIGLFAFSASRRHRQGKDYGASEGPSGWLPLSLYGGTSHSAASAKTNTTGSYASSLPSNLCRHFSFAEIKSATNNFDEALLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDHMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEILCARPALNPALAKEQVSLAEWAAHCYLKGILDQIIDPYLKGKIAPECFKKFAETAMKCVADQGIERPSMGDVLWNLEFALQLQESAEESGNGFGDIHNEEEPTYTDSKGKKDSDAMGGYDGNVTDSRSSGISMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3808g00001 901 CDD STKc_IRAK 549 815 - -
Vium3808g00001 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 664 676 IPR008271 GO:0004672|GO:0006468
Vium3808g00001 901 FunFam FERONIA receptor-like kinase 219 415 - -
Vium3808g00001 901 MobiDBLite consensus disorder prediction 860 894 - -
Vium3808g00001 901 ProSiteProfiles Protein kinase domain profile. 543 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3808g00001 901 MobiDBLite consensus disorder prediction 827 901 - -
Vium3808g00001 901 Gene3D Transferase(Phosphotransferase) domain 1 620 835 - -
Vium3808g00001 901 FunFam Receptor-like protein kinase FERONIA 515 619 - -
Vium3808g00001 901 SUPERFAMILY Protein kinase-like (PK-like) 517 816 IPR011009 -
Vium3808g00001 901 SMART serkin_6 543 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3808g00001 901 FunFam FERONIA receptor-like kinase 34 194 - -
Vium3808g00001 901 ProSitePatterns Protein kinases ATP-binding region signature. 549 572 IPR017441 GO:0005524
Vium3808g00001 901 Gene3D - 220 413 - -
Vium3808g00001 901 Gene3D - 34 194 - -
Vium3808g00001 901 PANTHER OS03G0124300 PROTEIN-RELATED 10 481 IPR046957 GO:0004672
Vium3808g00001 901 Pfam Protein tyrosine and serine/threonine kinase 549 811 IPR001245 GO:0004672|GO:0006468
Vium3808g00001 901 FunFam Receptor-like protein kinase FERONIA 620 830 - -
Vium3808g00001 901 Gene3D Phosphorylase Kinase; domain 1 528 619 - -
Vium3808g00001 901 MobiDBLite consensus disorder prediction 831 853 - -
Vium3808g00001 901 Pfam Malectin-like domain 37 414 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3808g00001 Vium-Chr3808 2669 7055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3808g00001 18 901 Receptor kinase-like Gene Family AT3G51550 73.957 0.0 1317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium3808g00001 Malectin_like 1.8e-39 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3808g00001 - - gmx:100499644 1605.5