Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3802g00004 ATGGGAAATAAAAGGCTCACAAAGCCAGGCACAGGCATTAGAATATGGTCTCTGATTATGCATATGGAAAGTTACCACTATTCTGGTTGGCCTCTTGCTACCAACATGGCTCAGTGCAATTCTGCACCAAACAGTGATCAATTATCTCCTTTTTCAGTTCCAACAACTCAAACACCCCCTCTTGCTTCTGACCCTCAATCTCTTCAGTTTACTGAGTTCCCTTTGTGGCCTGCAACCATTGCAGAAGATAGAGTTGCCAGTGCTTCAAAGAGTCATAGCCAAGCAGAGAAAAGGCGCAGGGACAGAATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCGATGTGTGTGAGCAAAGGCATCACTGTTCCAAGTGAAACTGATGAAGTAACAATTGACTTCCAGGAAGCCGAAGATGAAAGCTACAAAAAAGTGAAGAAATTGAAGGAGAAGATGATAATCAAAGCTTCAGTTTGCTGTGATGATCGACCAGAAGTGTTCCCTGAGCTGATCGAAGTTCTGAAAGGGTTGAGACTGACAGCAGTTAAGGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTCTTTGTTCAAAGGACAGTGAAGAGAACAGTGTTTGCCTCAGCACTCTCAAACAATCACTTAAATCAGCTGTCAACAAAATTGCTTCGTTATCTGTGGCCACTAATTGTCCCACCAGAAGTAAGAGGCAGAGGTTCTTCTTCCCTTCTCATTACCTACAACAACCATAA 840 0.4321 MGNKRLTKPGTGIRIWSLIMHMESYHYSGWPLATNMAQCNSAPNSDQLSPFSVPTTQTPPLASDPQSLQFTEFPLWPATIAEDRVASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMCVSKGITVPSETDEVTIDFQEAEDESYKKVKKLKEKMIIKASVCCDDRPEVFPELIEVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEENSVCLSTLKQSLKSAVNKIASLSVATNCPTRSKRQRFFFPSHYLQQP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3802g00004 279 MobiDBLite consensus disorder prediction 45 66 - -
Vium3802g00004 279 Pfam Helix-loop-helix DNA-binding domain 90 136 IPR011598 GO:0046983
Vium3802g00004 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 140 IPR036638 GO:0046983
Vium3802g00004 279 CDD bHLH_AtAIG1_like 82 160 - -
Vium3802g00004 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 136 IPR011598 GO:0046983
Vium3802g00004 279 SMART finulus 93 142 IPR011598 GO:0046983
Vium3802g00004 279 Gene3D - 81 142 IPR036638 GO:0046983
Vium3802g00004 279 PANTHER TRANSCRIPTION FACTOR BHLH30 79 274 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3802g00004 Vium-Chr3802 66987 68589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3802g00004 73 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 45.238 1.66e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3802g00004 HLH 9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3802g00004 - - gmx:100306102 399.438