Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3802g00003 ATGACGGACGTTGGCAACGATCGGGTGAAGGGCTCGTGGAGTCCTCAGGAGGATGAGATACTACTGAAATTGGTGAACCAGTATGGCGCGCGGAATTGGTCCCTCATCAGCAGCAGCATTCCGGGGCGTTCTGGCAAGTCCTGCCGGCTGCGATGGTGCAACCAGCTGAGCCCGGAGGTGCAGCACCACCCCTTCACTTCGACGGAGGACCAGATTATCATCGAGGCGCACGCTATTCACGGGAACAAGTGGGCCACACTCTCTCGCCTCCTCCCTGGCCGCACAGACAACGCCATTAAAAATCACTGGAACGCCACCCTCCGGCGCCGTAGCACGATGAGTCAGTTGTCATCGGCTGCATCGCCAAACACCAAGCGCGCCTCTCCGTTGGAGTGGGACTACCCTTTCAAGAAACAGCATGCGGAGAAAGAAAGAGAGGAGATTCCCGTTGTCACGCCTTTGAGTCTTTTTCCCTCGGCTGAAAAATCAGATAGAGAACTGGAAGAGGGAGAGAAAAGAGTGGCAGAAGAAAACAAGATTTCGAATCAGGATTACTTTCTGAAGATCATGCGGCGCATGATTGCTGATGAGGTTAGCAATTACCTTCATACTTTGTACAAGGGAAGGGAATACTCTTTAGATCATCCTCCAAATCTTCCCAAATAA 666 0.5255 MTDVGNDRVKGSWSPQEDEILLKLVNQYGARNWSLISSSIPGRSGKSCRLRWCNQLSPEVQHHPFTSTEDQIIIEAHAIHGNKWATLSRLLPGRTDNAIKNHWNATLRRRSTMSQLSSAASPNTKRASPLEWDYPFKKQHAEKEREEIPVVTPLSLFPSAEKSDRELEEGEKRVAEENKISNQDYFLKIMRRMIADEVSNYLHTLYKGREYSLDHPPNLPK 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3802g00003 221 PANTHER MYB PROTEIN-RELATED 10 126 - -
Vium3802g00003 221 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
Vium3802g00003 221 Pfam Myb-like DNA-binding domain 64 104 IPR001005 -
Vium3802g00003 221 FunFam MYB transcription factor 10 61 - -
Vium3802g00003 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 111 IPR017930 -
Vium3802g00003 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 60 IPR017930 -
Vium3802g00003 221 CDD SANT 64 107 IPR001005 -
Vium3802g00003 221 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Vium3802g00003 221 Gene3D - 9 61 - -
Vium3802g00003 221 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vium3802g00003 221 Coils Coil 160 180 - -
Vium3802g00003 221 SMART sant 9 58 IPR001005 -
Vium3802g00003 221 SMART sant 61 109 IPR001005 -
Vium3802g00003 221 ProSiteProfiles Myb-like domain profile. 5 56 IPR001005 -
Vium3802g00003 221 CDD SANT 12 54 IPR001005 -
Vium3802g00003 221 Gene3D - 63 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3802g00003 Vium-Chr3802 59407 60134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3802g00003 7 138 MYB Transcription Factor Family AT4G37260 60.606 7.39e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3802g00003 Myb_DNA-binding 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3802g00003 - - vra:106763298 366.696