Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3802g00002 ATGTCGATTCGCGATTCCGAATCCTTCAATTGGCACTCCGACGCGGAGCTCGAAGACCAGGACCTCCATATCCGCGGCCAGAAGCTCTTCTTCATCGTCGTCCTTTTCTCCATCGTCGTCCTCTTCACCGCGCTCTTCCTCTTCGCGCGACGGATCTGCCACCACCACGGCCTCCTCTTCGACGCCGTCCCACCGCAACAGGCGCCGCCGACGCTTCCATCTGATGACGGCCTCGACGCCGACGCGATCAAGCGGCTACCGATCATCCTGCACCAGCGCACGGCGGCGGAGGAGACGGAGTGCTGCATCTGCCTCGGCGCGTTCGTCGACGGCGCGAAGCTGAAGGTTCTCCCTGGATGCGAGCACAGCTTCCACAGCGAGTGCGTGGACAAGTGGCTCGCGAATCACTCCAATTGCCCTCTCTGCAGAGCTTCGCTGAAACTCAATCCTTCGTTACCGAGGATTTTGATCCAATCGCCGCCCGTTAGAACAACGCTTCCTCTCTGA 507 0.6055 MSIRDSESFNWHSDAELEDQDLHIRGQKLFFIVVLFSIVVLFTALFLFARRICHHHGLLFDAVPPQQAPPTLPSDDGLDADAIKRLPIILHQRTAAEETECCICLGAFVDGAKLKVLPGCEHSFHSECVDKWLANHSNCPLCRASLKLNPSLPRILIQSPPVRTTLPL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3802g00002 168 SMART ring_2 101 142 IPR001841 -
Vium3802g00002 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 148 IPR013083 -
Vium3802g00002 168 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Vium3802g00002 168 SUPERFAMILY RING/U-box 87 150 - -
Vium3802g00002 168 Pfam Ring finger domain 100 143 IPR001841 -
Vium3802g00002 168 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3802g00002 Vium-Chr3802 27144 28137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3802g00002 11 151 C3H Transcription Factor Family AT3G11110 41.497 9.16e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3802g00002 - - gmx:100794554 260.381