Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3802g00001 ATGGCCTCTCTCCAACCTCAACCCCAAGAAACCAAACCCACCGTCACCACCGCCACACCCTCCACTCCCAGCCTAACATCTATCACCTCCAATCACACCACCATCAACAACAATAATACTGCTCGTAAATGCAAAGGCAAAGGTGGCCCCGACAACAACAAATTTAGGTACCGCGGCGTCAGACAACGAAGCTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCACGTAAGCGCACCCGCAAGTGGCTCGGCACCTTCGCCACCGCAGAAGACGCCGCCAGAGCCTACGACCGTGCCGCCCTCATCCTCTACGGCTCCCGTGCCCAGCTTAATCTCCAACCCTCCTGTTCTTCTTCTCACTCCTCCTCCTCTCGTACCACCTCTTCCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCTCGCCCCTCGGGCTTCGCTTTCAATTTTCCCTTCCACGCCGCCGCCCTTCCCTACCCCTGCGCCGCCGCGTATGCCACCACCTTCAATTACACCCCGCAGGCACTGTGCCCTAACGAGAATAGCAATAATACAGTGCATGTTCATCGTCATCATCACCATCGTCGACCTGAGGAAGTGGTGCAAGTGCCACATGCTTTATCAACATCATACCCAAAGTCGGAATCCGATGTGAGTTTAGGTGGGAATAATACTACTGCTAATAGCTCCAGTAGATCAACCTCGTACCAGAGGCATGGTTTCCAGGATAATAACCGTTTGCATGTGCAACACGACCATTCGTCGAATCATCAGCAACATCAGAAAGGCGATGTGGATGGAGTTGATTCCGTTGTGGGTTCGGCGGAGGGTTCTCAGGCAAATATGGAGGCTTCCGAGGATCCAGATCTGTCGTTGGTGGGGACAGTGGGGCTTGGATCTTCTTCGTCCCTGTGGCCTTTGGCGAGTGAGGACGATTACACTGATAATTTGTGGGATTATAATGATCCTTTCTTCTTTGATCTTTAG 984 0.5335 MASLQPQPQETKPTVTTATPSTPSLTSITSNHTTINNNNTARKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAALILYGSRAQLNLQPSCSSSHSSSSRTTSSSSTQTLRPLLPRPSGFAFNFPFHAAALPYPCAAAYATTFNYTPQALCPNENSNNTVHVHRHHHHRRPEEVVQVPHALSTSYPKSESDVSLGGNNTTANSSSRSTSYQRHGFQDNNRLHVQHDHSSNHQQHQKGDVDGVDSVVGSAEGSQANMEASEDPDLSLVGTVGLGSSSSLWPLASEDDYTDNLWDYNDPFFFDL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3802g00001 327 MobiDBLite consensus disorder prediction 206 237 - -
Vium3802g00001 327 FunFam Ethylene-responsive transcription factor 2 56 114 - -
Vium3802g00001 327 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Vium3802g00001 327 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Vium3802g00001 327 MobiDBLite consensus disorder prediction 1 54 - -
Vium3802g00001 327 Pfam AP2 domain 56 105 IPR001471 GO:0003700|GO:0006355
Vium3802g00001 327 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Vium3802g00001 327 CDD AP2 56 113 IPR001471 GO:0003700|GO:0006355
Vium3802g00001 327 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Vium3802g00001 327 MobiDBLite consensus disorder prediction 250 292 - -
Vium3802g00001 327 MobiDBLite consensus disorder prediction 181 237 - -
Vium3802g00001 327 MobiDBLite consensus disorder prediction 1 43 - -
Vium3802g00001 327 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 30 269 - -
Vium3802g00001 327 MobiDBLite consensus disorder prediction 114 137 - -
Vium3802g00001 327 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vium3802g00001 327 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3802g00001 Vium-Chr3802 11553 12907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3802g00001 42 327 AP2-EREBP Transcription Factor Family AT2G40220 41.615 6.69e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium3802g00001 AP2 6.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3802g00001 K09286 - gmx:100779779 330.102