Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium37g00003 ATGGCATCAAGCTCAATGTCAGCTACAGGTTCATGGAGTGCTAAGGACAACAAGGCCTTTGAAAGGGCTCTAGCTGTTTATGACAAGGACACCCCTGACCGATGGAACAATGTTGCCCTTGCTGTTGGAGGGAAAACTCCTGATGAAGTGAAAAGGCACTATGAGCTACTCCTCAGAGACATTACTGAAATTGAATCAGGCCAAGTTCCATTCCCAAACTACAAGAAAACTGCTGAATCTGATGAAGAGGGGAAAAGGCTGAAAAACATGAAGCTCCAGTGA 282 0.4539 MASSSMSATGSWSAKDNKAFERALAVYDKDTPDRWNNVALAVGGKTPDEVKRHYELLLRDITEIESGQVPFPNYKKTAESDEEGKRLKNMKLQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium37g00003 93 SUPERFAMILY Homeodomain-like 11 65 IPR009057 -
Vium37g00003 93 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Vium37g00003 93 MobiDBLite consensus disorder prediction 76 93 - -
Vium37g00003 93 Pfam Myb-like DNA-binding domain 9 55 IPR001005 -
Vium37g00003 93 CDD SANT 11 58 IPR001005 -
Vium37g00003 93 FunFam Transcription factor SRM1 4 71 - -
Vium37g00003 93 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Vium37g00003 93 SMART sant 8 60 IPR001005 -
Vium37g00003 93 Gene3D - 2 71 - -
Vium37g00003 93 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 85 IPR044636 GO:0003700
Vium37g00003 93 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium37g00003 Vium-Chr37 46907 47727 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium37g00003 Myb_DNA-binding 8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium37g00003 - - gmx:100777923 162.54