Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium37g00002 ATGATGTCTCAGTCATTTGTTATGATTGCAGCATCACTGTTATTTGTTATAGCACAAAGTATTGTGGGAGTGAATTCAGTTTCACAAGCTGATAAGATAAGCACTTTGCCAGGGCAGCCACCAGTCAAATTCCAGCAATATGCAGGTTACATTACTGTGGATGAGAAGCAGAAGAGAGCTTTGTTTTACTACTTTGTTGAGGCAGAAGTGGAACCAGTTTCAAAGCCACTAGTTCTATGGTTAAATGGAGGGCCTGGTTGTTCTTCTGTTGGTGCTGGAGCTTTTGTTGAGCATGGCCCTTTCAAACCAAGTGAAAATGGACTTTTGAAAAATGAATTTAGCTGGAACAAAGAGGCAAATGTGCTGTACTTGGAATCACCAGCTGGTGTTGGTTTCTCCTACTCTGCTAACAAATCTTTCTATGACTATGTGAATGATGAAATGACAGCAAGGGACAATCTTGTTTTCCTACAGCGTTGGTTCACTAAATTCCCAGAGTTCAAAAACAATGATTTCTTTATCACAGGGGAAAGCTATGCAGGTCACTATGCACCCCAACTTGCACAACTCATTGTTCAAACCAAGACCAGGTTCAAACTCAAGGGAATAGCAATAGGGAATCCTCTTCTAGAATTTAACACGGATTTCAACTCTAGAGCTGAGTTTTTCTGGTCCCATGGCCTAATATCAGATTCAACTTACGAAATCTTCACCAAAGTATGCAACTATTCCCAAATTAGGAGACAGCATCAAAGTGGGACACTTACCCCCATTTGTTCAGGAGTAAATAGGCTAGTGGCAACGGAAGTTAGTAGATATATTGATACATATGATGTTACACTTGATGTGTGTCTTTCATCGGTAGATCAACAGGCTTATGTGCTGAATCAACTGACTCAACTGCAAGAGAGAGGAAAGATAGATGTTTGTGTGGAAGATGAAACTACTGCATATTTGAATAGGAAAGACGTGCAAAAAGCTCTTCATGCTAAGCTCGTAGGGATCACTTCTTGGTCAGTTTGCAGCGATATTCTTAAATATGACATGCAGAATCTAGAGATTCCAATTATTTCTATTCTAGGTGCACTTGCTAAGTCTGGTATCAGGGTTCTGGTATACAGTGGAGATCAAGATTCAGTGATCCCATTAATTGGTACAAGATCCCTGGTAAATGGACTGGCCAAGAACTTTGGACTTAACACAACAGTGTCCTATAGAACCTGGTTTGAGGGAAGACAGGTGGCTGGTTGGACACAAGTATATGGAGACATCTTATCATTTGCCACTGTAAGAGGAGCTGCTCATGAAGCTCCATTTTCCCAGCCAGAGAGATCACTGGTGCTACTGAAAGCATTTTTGGAAGGAAAACCACTTCCACAACCATTCTTTCAAATATGA 1398 0.4084 MMSQSFVMIAASLLFVIAQSIVGVNSVSQADKISTLPGQPPVKFQQYAGYITVDEKQKRALFYYFVEAEVEPVSKPLVLWLNGGPGCSSVGAGAFVEHGPFKPSENGLLKNEFSWNKEANVLYLESPAGVGFSYSANKSFYDYVNDEMTARDNLVFLQRWFTKFPEFKNNDFFITGESYAGHYAPQLAQLIVQTKTRFKLKGIAIGNPLLEFNTDFNSRAEFFWSHGLISDSTYEIFTKVCNYSQIRRQHQSGTLTPICSGVNRLVATEVSRYIDTYDVTLDVCLSSVDQQAYVLNQLTQLQERGKIDVCVEDETTAYLNRKDVQKALHAKLVGITSWSVCSDILKYDMQNLEIPIISILGALAKSGIRVLVYSGDQDSVIPLIGTRSLVNGLAKNFGLNTTVSYRTWFEGRQVAGWTQVYGDILSFATVRGAAHEAPFSQPERSLVLLKAFLEGKPLPQPFFQI 465
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium37g00002 465 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Vium37g00002 465 SUPERFAMILY alpha/beta-Hydrolases 35 459 IPR029058 -
Vium37g00002 465 FunFam Carboxypeptidase 26 459 - -
Vium37g00002 465 Gene3D alpha/beta hydrolase 27 285 IPR029058 -
Vium37g00002 465 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 442 IPR001563 GO:0004185|GO:0006508
Vium37g00002 465 Gene3D - 310 345 - -
Vium37g00002 465 Gene3D - 356 455 - -
Vium37g00002 465 FunFam Carboxypeptidase 356 455 - -
Vium37g00002 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Vium37g00002 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Vium37g00002 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Vium37g00002 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Vium37g00002 465 Pfam Serine carboxypeptidase 37 455 IPR001563 GO:0004185|GO:0006508
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium37g00002 Vium-Chr37 32603 36653 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium37g00002 318 458 Calmodulin-binding Proteins AT2G22960 29.371 1.73e-15 72.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium37g00002 K16297 - gmx:100805028 868.226