Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium379g00005 ATGAACACTGCTGATTGGGATCAAGAACTGAGAAAGTATCAAGATGTAATAGCTTCAGGTACCAAGAGTATGAAAATAAAGGCCATGATGATGCTGGCACGTTTTTCTAAGGATGCCCCTGAGTATGTTTTAGCTCGCACCATACCCATTCTCACTGAGATTCTTGGTCACAATGTTTCAAATGATTCTGGTCCTACACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGGGGTGAGGGTGCGTTGGCCGTTGAAATTGGTGGACACGGTGCCCCTCATTCTTTGATGAGGTTGTTGCCTCACTCTGATGAAAGGATGCAGAAGGTTCTGATAAAGTGTTTGCTCGTCATTGTTTGTTTTTGTAATGCAACTAGGACAGTTGTTGCCACCAATGGTGGGGTGGAATTGATCATTGGTTTGTTGAGTTCTTGCACCAATGATACTAAGAGGTATTTGTTGGAGATTTTGAGCGTGTTAGCATTGAGGAGGGATGTTAGGAAGGCTCTCACTAGACTAAGAGCTCTACATTATGTTGTGGAGGCTGCTAGTTTTGGGAGCATGGTGTCTAGGGAAAGGGCTTGTCAAGCAATTGGGTTGCTTGGAGTCACCAGACAGACTCGGCGTATGCTTGTTGAATTGGGAGCAATTCCAGTGCTTGTGTCCTTGTTTCGTGAAGGAGAACACTCCACAAAGCTTGTTGCTGGCAATTCTCTTGGTGTGATATCTGCTCATGTTGATTACATAAGGCCGGTTGCTCAAGCTGGGGCTATTCCCCTTTATGCTGAGCTTCTTGAAGGACCTGATCCCTCTGGGAAAGAGATAGCTGAGGATGTTTTTTGTATATTGGCTGTTGCTGAGGCTAATGCTGTTGAAATTGCTGGGCACTTGGTGAGGATTCTGAGAGAAGGTAATGATGAGGCGAAGGCTTCTGCGGCGGATGTGATGTGGGATCTGTCGGGTTACAAGCATTCAATGTCTGTAGTACGGGATTCAGGTGCGATTCCTCTTCTTGTTGAGCTTTTGGAGACTGGGAGTGAAGATGTGAAGGTGAATGTTTCTGGGGCATTTGCTCAACTGAGCTATGATGGAACTGATAGAATGTCACTTGCTGAAGCAGGGGCGATTCCAATTCTCATAGACTTGATGAATGATGTTGATGAGGTTGAGGAACTAAGGGATAATGCTACGGAGGCTCTTGTAAATTTTTATGAAGATCCATTGTATCATGATAGAGTGTCGGATGCAATTAATGTTTCTTCCTTCAGAAATATGCAGAATAGGTTAGTTCATATTCGGGCATCGAATGAGCACATGGCTAGATCCTTGAGAAGAATGAGTGTTGAGCAGCTCACATGGAACCCAGATCTTGTCTAA 1386 0.4466 MNTADWDQELRKYQDVIASGTKSMKIKAMMMLARFSKDAPEYVLARTIPILTEILGHNVSNDSGPTLQEAAAYCLKCIACRGEGALAVEIGGHGAPHSLMRLLPHSDERMQKVLIKCLLVIVCFCNATRTVVATNGGVELIIGLLSSCTNDTKRYLLEILSVLALRRDVRKALTRLRALHYVVEAASFGSMVSRERACQAIGLLGVTRQTRRMLVELGAIPVLVSLFREGEHSTKLVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEANAVEIAGHLVRILREGNDEAKASAADVMWDLSGYKHSMSVVRDSGAIPLLVELLETGSEDVKVNVSGAFAQLSYDGTDRMSLAEAGAIPILIDLMNDVDEVEELRDNATEALVNFYEDPLYHDRVSDAINVSSFRNMQNRLVHIRASNEHMARSLRRMSVEQLTWNPDLV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium379g00005 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Vium379g00005 461 SUPERFAMILY ARM repeat 6 408 IPR016024 -
Vium379g00005 461 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 3 418 - -
Vium379g00005 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 406 IPR000225 GO:0005515
Vium379g00005 461 SMART arm_5 325 365 IPR000225 GO:0005515
Vium379g00005 461 SMART arm_5 207 247 IPR000225 GO:0005515
Vium379g00005 461 SMART arm_5 366 408 IPR000225 GO:0005515
Vium379g00005 461 SMART arm_5 248 288 IPR000225 GO:0005515
Vium379g00005 461 SMART arm_5 35 80 IPR000225 GO:0005515
Vium379g00005 461 SMART arm_5 125 165 IPR000225 GO:0005515
Vium379g00005 461 Gene3D - 243 435 IPR011989 -
Vium379g00005 461 Pfam Armadillo/beta-catenin-like repeat 331 364 IPR000225 GO:0005515
Vium379g00005 461 Coils Coil 382 402 - -
Vium379g00005 461 Gene3D - 12 242 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium379g00005 Vium-Chr379 35230 37356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium379g00005 187 406 U-box Gene Family AT3G46510 26.432 3.25e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium379g00005 - - gmx:100819735 813.142