Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3789g00001 ATGGAGGAGCAACCAAAAAGGGAACCTAGTCCCCTCCGTAAAATGGTGGCGGTGTCATCCATCGCTGCCGGTATCCAATTCGGATGGGCCCTACAACTCTCCCTTCTAACACCATATGTACAAACCCTAGGAGTTCCTCATGCTTGGGCCTCCTTCATCTGGCTCTGTGGCCCCATCTCTGGCCTAGTAGTTCAGCCCATTGTAGGCTATTGCAGTGACCATTGCAAGTCTCCTTTCGGTCGTCGTCGTCCCTTTATCCTCGCCGGTGCACTTTTCGTTGCCATAGCCATTATTCTTATTGGCTTCGCTGCCGATATAGGACACTTAGCTGGCGATGACATCACCAAGAAAACCCGTCCACGTGCCGTCGCCATTTTCGTCATTGGCTTCTGGATCTTAGATGTTGCCAACAACATGCTCCAGGGACCATGTCGCGCCTTCCTTGGTGACTTGGCTGCCGGCGATCAGAAGAAGACGAGAACCGCAAACTCGTTCTACTCTTTTTTCATGGCTGTCGGCAACGTCCTGGGCTATGCCGCAGGATCTTATGACGGTCTCCACAAGATCTTCCCTTTCACAGAAACTGAGGCATGCAACGTCTTCTGCGCAAACCTAAAGAGTTGCTTTTTCTTCTCCATCGTTCTTCTTCTTGTTCTATGCATTATAGTTCTCTCTTGCGTGAATGACCCTCAGTTCATTCCGGCATCTGAGAAGATGAAGGTTGAGGAGGCAGAGAACACGCACGTTTCATGCTTCTGCGGAGAGTTGTGCGTTGCATTCAAGGGACTGAAGAAGCCAATGTGGATGTTGATGCTAGTGACAGCTATTACATGGATTGCGTGGTTCCCTTATGTGTTGTTCGACACTGACTGGATGGGTCGTGAGGTGTACGGCGGTGATGTGGGTCAGAAGGCATACGATGCTGGTGTGCATGCTGGTTCTTTGGGGCTCATGTTGAATTCAGTGGTGTTGGCTGTGGCGTCTTTGGGTGTAGAACCACTAGGTCGCTTGGTTGGTGGAGTCAAGTGGTTGTGGGCAATCGTTAATGTTATTCTCGCAGTTTGCATGGCAATGACTGTGCCCATTGCAAAAATCGCTGAGCATCAACGTGCCCTTAACCCTGCCCTCATTGGAAACCCCTCAATGAATGTGAAAGCTGGATCCTTAGCCTTCTTCTGCGTCCTTGGTATTCCTTTGGCGGTTACGTATAGTGTTCCCTTTGCTTTAGCCTCTATCTACTCTAGCAACTCAGGAGCAGGACAAGGACTATCTTTGGGTCTTCTCAATGTTGCAATTGTGATTCCTCAGATGATTGTATCGGCAATTAGTGGACCATGGGATTCTTGGTTTGGTGGTGGCAACTTGCCGGCGTTCGTGTTGGGCGCGGTGGCGGCTGCCATAGGTGCCATACTGGCAGTTGTTGTACTTCCAAACCCCAAGAAACACGATGCAACCAAGATTCCTAGCCTCTCCATGGGAAGCTTCCATTAA 1491 0.5017 MEEQPKREPSPLRKMVAVSSIAAGIQFGWALQLSLLTPYVQTLGVPHAWASFIWLCGPISGLVVQPIVGYCSDHCKSPFGRRRPFILAGALFVAIAIILIGFAADIGHLAGDDITKKTRPRAVAIFVIGFWILDVANNMLQGPCRAFLGDLAAGDQKKTRTANSFYSFFMAVGNVLGYAAGSYDGLHKIFPFTETEACNVFCANLKSCFFFSIVLLLVLCIIVLSCVNDPQFIPASEKMKVEEAENTHVSCFCGELCVAFKGLKKPMWMLMLVTAITWIAWFPYVLFDTDWMGREVYGGDVGQKAYDAGVHAGSLGLMLNSVVLAVASLGVEPLGRLVGGVKWLWAIVNVILAVCMAMTVPIAKIAEHQRALNPALIGNPSMNVKAGSLAFFCVLGIPLAVTYSVPFALASIYSSNSGAGQGLSLGLLNVAIVIPQMIVSAISGPWDSWFGGGNLPAFVLGAVAAAIGAILAVVVLPNPKKHDATKIPSLSMGSFH 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3789g00001 496 Pfam MFS/sugar transport protein 27 181 - -
Vium3789g00001 496 NCBIfam sucrose/proton symporter 11 481 IPR005989 GO:0005886|GO:0008515|GO:0015770
Vium3789g00001 496 SUPERFAMILY MFS general substrate transporter 2 484 IPR036259 -
Vium3789g00001 496 Gene3D MFS general substrate transporter like domains 8 478 IPR036259 -
Vium3789g00001 496 CDD MFS_SLC45_SUC 15 459 - -
Vium3789g00001 496 FunFam Sucrose transport protein 9 476 - -
Vium3789g00001 496 PANTHER SUGAR TRANSPORTER 11 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3789g00001 Vium-Chr3789 194 2438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3789g00001 8 479 Sucrose Transporter Gene Family AT1G71890 63.103 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3789g00001 K15378 - gmx:100785899 787.719