Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3788g00010 ATGACTATGCAGCTTCCGTGTGACAGTGAGGGCGCCTGCATGCAGTGCCAGGCCGTGCCCGGAGAGGAAGAGAGGCTGCTATGCGTCACCTGCAACACTCCTTGGCACCTTCCATGCCTGTCCTCCCCTCCAACCACCCTTGCAGCCACCGCTAACTGGTCCTGTCCTGACTGCTCCGATATCGATCCTCAACCTTCACCTCTCCCTGCTCCCCTTCGCAATGACCTCGTCACTGCAATGCTTACCATTGAAAATGATGATTCTCTCACCCAAACTCAGAAAGCCAAGAAACGCCAACAACTCATGACTGGAAAAGCTCCTGCACAAGATGAGGATGAGGATGACGATGACGAAGAAGAAGAGAACCAGACTAAATCCACAAATGTTTGGGAAATGCTCTCTCAATCTATCAAATGCTCTATCTGCCTCCAGTTACCGGAGAGGCCCGTCACGACTCCTTGTGGGCACAGTTTCTGTCTGAAGTGTTTTCAGAAATGGCTTCGAGGAGGAAATACGAAATGTGTCCAATGCCGCCAGCTTGTTCCGGCAAAGATGACAAGCCAGCCCCGGATCAATTCTGCATTGGTGTTTGCAATTCGCATGGCCAGGACCAATTCTAACCCTAATGGTCGTGGAGGAGATAGGACTGTCAACCATTTTTGGCACAATCAAGACAGACCCGATGAGCCCTTTACCACAGAACGTGCTCAGAGGAATGGCCGTGCCAATGCGGCCAGTGGAAAAATATTTGTGACCGTTCCGACTGATCATTTTGGTCCAATCACTGCAGAACATGACCCCATGAGGAATCAGGGTCTGCTGGTGGGTGAGAGTTGGAGAGACAGACTGGAATGCAGACAATGGGGTGCTCACTTCGTCCCTGTGGGTGGCATTGCTGGCCAATCAGATCGAGGTGCACAATCTGTTGTCCTTTCTGGTGGTTATGTGGATGACGAAGACCATGGAGAGTGGTTTCTCTACACTGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGCAGTTTGAGAAGTACAACCTTGCACTTCAAGTTAGCTGTCTTAAGGGTTATCCGGTTCGAGTTGTCAGATCTCACAAAGAAAAGCGATCTTCATATGCCCCCGAGACTGGCGTGCGCTACGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCAGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTTAGGTGTGACAATGAACCAGCCCCCTGGACAAGTGATGATCGTGGAGATAGGCCCAGACCCTTACCGGTCATCCGTGAACTGAAAAAGGCCACCGTCACATTTGAAAGGACTGAATCTCCGTCTTGGGATTTTGATGAAGAAGATTCTCTTTGGAAGTGGAAGAAACCACCACCTCCCAGCAAACGAAAGGTGCAAAGTGAGGAACCCGTAGAGGGAATAAGGGCAAGGTCAACTAGGGAAACGACGAAGTTCCAACTTGAGATGCTCAAGAAAAGATTGCACATGGGGTTCTCGTGCATGATATGCACGGAGGTTATGGTTTCACCGGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTAAGTTTGCTGGTCAGGCTTTGGTGAAGGAGAGAAGCAGGGGCGGGAGAACGCTTCGGTCCCAAAAAATTGTGATACAATGTCCTTCTTGCCCTATTGACATCTCTGATTATCTTCAGCACATTCAGGTTAATGTAGATTTGAAGGATGCGATTGAGTCACTGAAAGCCAATGTTGCAGAAATTGAAAAATCGCTGGAGTCAACTGGAGACGAAGCAGATGGATTAGATGACAATACTGATTCAGGGAACCAAAATTCTGCAAAGGAGTTGAACGATCTACCTGAAGGATCTGATGTTGATGAGCTTGAGGACACCAGTGATGAGGAGCAAGATCCAGAAGTAATGTGCAATAGAAAGAGAAAGAAAGGTGATGATGAAACACAATCGCCTGATGATAAAATGGATAAAAGAGATAAAATAAACAAAATGACTGAGCAAGAAGTGGATGATAAAAATGATTCTTCATCATCATGTCCTCTCAATCTTCCATGA 2112 0.4773 MTMQLPCDSEGACMQCQAVPGEEERLLCVTCNTPWHLPCLSSPPTTLAATANWSCPDCSDIDPQPSPLPAPLRNDLVTAMLTIENDDSLTQTQKAKKRQQLMTGKAPAQDEDEDDDDEEEENQTKSTNVWEMLSQSIKCSICLQLPERPVTTPCGHSFCLKCFQKWLRGGNTKCVQCRQLVPAKMTSQPRINSALVFAIRMARTNSNPNGRGGDRTVNHFWHNQDRPDEPFTTERAQRNGRANAASGKIFVTVPTDHFGPITAEHDPMRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQQFEKYNLALQVSCLKGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDRGDRPRPLPVIRELKKATVTFERTESPSWDFDEEDSLWKWKKPPPPSKRKVQSEEPVEGIRARSTRETTKFQLEMLKKRLHMGFSCMICTEVMVSPVTTPCAHNFCKSCLEGKFAGQALVKERSRGGRTLRSQKIVIQCPSCPIDISDYLQHIQVNVDLKDAIESLKANVAEIEKSLESTGDEADGLDDNTDSGNQNSAKELNDLPEGSDVDELEDTSDEEQDPEVMCNRKRKKGDDETQSPDDKMDKRDKINKMTEQEVDDKNDSSSSCPLNLP 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3788g00010 703 MobiDBLite consensus disorder prediction 605 703 - -
Vium3788g00010 703 MobiDBLite consensus disorder prediction 88 128 - -
Vium3788g00010 703 SUPERFAMILY RING/U-box 511 595 - -
Vium3788g00010 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 606 IPR045134 -
Vium3788g00010 703 Gene3D - 239 436 IPR036987 -
Vium3788g00010 703 SUPERFAMILY PUA domain-like 242 440 IPR015947 -
Vium3788g00010 703 Coils Coil 584 611 - -
Vium3788g00010 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 61 IPR013083 -
Vium3788g00010 703 ProSiteProfiles YDG domain profile. 268 416 IPR003105 -
Vium3788g00010 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 615 IPR013083 -
Vium3788g00010 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 203 IPR013083 -
Vium3788g00010 703 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Vium3788g00010 703 MobiDBLite consensus disorder prediction 470 489 - -
Vium3788g00010 703 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Vium3788g00010 703 Pfam RING-type zinc-finger 514 548 IPR027370 -
Vium3788g00010 703 SUPERFAMILY FYVE/PHD zinc finger 5 66 IPR011011 -
Vium3788g00010 703 SMART G9a_1 263 420 IPR003105 -
Vium3788g00010 703 ProSitePatterns Zinc finger PHD-type signature. 13 58 IPR019786 -
Vium3788g00010 703 MobiDBLite consensus disorder prediction 636 650 - -
Vium3788g00010 703 ProSiteProfiles Zinc finger RING-type profile. 139 178 IPR001841 -
Vium3788g00010 703 MobiDBLite consensus disorder prediction 651 692 - -
Vium3788g00010 703 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 239 434 - -
Vium3788g00010 703 Pfam SAD/SRA domain 271 419 IPR003105 -
Vium3788g00010 703 Pfam Zinc finger, C3HC4 type (RING finger) 139 177 IPR018957 GO:0046872
Vium3788g00010 703 SUPERFAMILY RING/U-box 131 185 - -
Vium3788g00010 703 FunFam Predicted protein 92 204 - -
Vium3788g00010 703 SMART ring_2 514 570 IPR001841 -
Vium3788g00010 703 SMART ring_2 13 58 IPR001841 -
Vium3788g00010 703 SMART ring_2 139 177 IPR001841 -
Vium3788g00010 703 SMART Ubox_2 136 194 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3788g00010 Vium-Chr3788 53590 57500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3788g00010 1 605 C2H2 Transcription Factor Family AT5G39550 55.791 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3788g00010 K10638 - gmx:100801535 1119.76