Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3788g00006 ATGCAACCCAAATCCGCCGCCAGACTGCCCAGCTTCCGCTCTATTCCGGCCTCCTGGTTAGAATCAGTTCTTTTGAAAGAGGAGGAAGAACAAGAAGAAGAAGAGGAGGAACAAGAAGAAATCCAACAAGCTGAAGAAGAGCCCTTGACCTTTACCCAGCTGCTTTCTACAATCGCAGCTCCCTCTCCTTCCCAACGCTATGACACACAGGATTACCCTCCCACCACCATGTCCATGTCCATCCCCAATTCAATCGCACCCAAGGAACTTTATGCTTCTGCCCCCCACCTCAAAGTGGACAACATGTTCACGTTTGAGGACTCGGTACCCTGTAGAGTTCGGGCAAAGCGCGGCTGTGCTACGCATCCCAGGAGTATTGCCGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAACACTGCAGATATGTTGGATGAGGCGGTAGCATATGTCAAGCTTCTACAAAAGCAAATTGAGGAACTGACAGAGCACCAACGGAGGTGCAGATGTATGGTTCAAGAATAA 570 0.4947 MQPKSAARLPSFRSIPASWLESVLLKEEEEQEEEEEEQEEIQQAEEEPLTFTQLLSTIAAPSPSQRYDTQDYPPTTMSMSIPNSIAPKELYASAPHLKVDNMFTFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKLLQKQIEELTEHQRRCRCMVQE 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3788g00006 189 MobiDBLite consensus disorder prediction 26 44 - -
Vium3788g00006 189 FunFam Transcription factor bHLH130 family 120 188 - -
Vium3788g00006 189 SMART finulus 125 175 IPR011598 GO:0046983
Vium3788g00006 189 Pfam Helix-loop-helix DNA-binding domain 124 170 IPR011598 GO:0046983
Vium3788g00006 189 Coils Coil 20 47 - -
Vium3788g00006 189 Gene3D - 120 189 IPR036638 GO:0046983
Vium3788g00006 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 169 IPR011598 GO:0046983
Vium3788g00006 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 187 IPR036638 GO:0046983
Vium3788g00006 189 Coils Coil 159 189 - -
Vium3788g00006 189 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 183 - -
Vium3788g00006 189 MobiDBLite consensus disorder prediction 25 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3788g00006 Vium-Chr3788 24739 28675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3788g00006 92 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 74.490 3.45e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3788g00006 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3788g00006 - - vum:124835640 340.117