Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3786g00001 ATGGACGAAACTTCATCCGACTCTTTTCAGTCTTCACACGAGTCTGCTTCCTATTCATCTAACTCTTCACACGAGTCTGCTTCCCATTCATCTCAGTCTTCACACGAGTATGCTTCTCAGTCTTCCGACGAGTATGTTTCCTCTTCATCAGATGGTCTGGAATTTGAACCAAAGAATGCATTGCCAACATCTGATAGAAAAAATGTTAAGCGGAAATTGTCGAGTTCCTCATCGGAAAGCGATGGAGGAGGGTCAAGTAGAAGACTGAACAAAGTGGAAGATGCAGACGGCGATGATGATGGCCCTGTGAGATACCGCAGAGGGAAACAGGTAAAGATAGAAGAATCTTTGTGTGTGTGTGGTATTTGCATGGATGCCATACCTGATGAAAAGAAGTTCAGGATCCAAAACTGTTCTCACATCTTTTGCAATGGCTGCATCACAAGACATGTTGCTGCAAAGATTGAGGAGAATAGATCAGTGGTGCAATGCCCAAACCCTAATTGCAAGGAGGGTATAGAGCTTGAGCATTGTGGTTCGATTATCCCTAAAGAAGTGTTCGATAAATGGGGAGATATTCTTTGTGAGAATCTAGTGGTTGAAGCAGAAAAGTTTTTCTGTCCTTTTAAGGACTGTTCAGCTATGTTGATGCGTGATGGTGAAGAAGTTGTGACTTCATCAGAGTGTCCACATTGCCACAGACTGTTCTGCGCACAGTGCAGGGTTTCGTGGCATGCAGGAATGGACTGTGAGGAGTTTCAGAGGTCGAAAAGAGAGATAGGAGAGAATGGAGACTCGATGGTGACGAAGCTTGCAAAGAAGAAAGATGTAATCATAAATTTTGCTATGATTGTGGATCGTCTTGGAACAATAATGAGCACTATTCATGCCGATCTAAATAAGAATTGCAAAAACATTGTTATG 924 0.4275 MDETSSDSFQSSHESASYSSNSSHESASHSSQSSHEYASQSSDEYVSSSSDGLEFEPKNALPTSDRKNVKRKLSSSSSESDGGGSSRRLNKVEDADGDDDGPVRYRRGKQVKIEESLCVCGICMDAIPDEKKFRIQNCSHIFCNGCITRHVAAKIEENRSVVQCPNPNCKEGIELEHCGSIIPKEVFDKWGDILCENLVVEAEKFFCPFKDCSAMLMRDGEEVVTSSECPHCHRLFCAQCRVSWHAGMDCEEFQRSKREIGENGDSMVTKLAKKKDVIINFAMIVDRLGTIMSTIHADLNKNCKNIVM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3786g00001 308 SUPERFAMILY RING/U-box 115 197 - -
Vium3786g00001 308 MobiDBLite consensus disorder prediction 1 106 - -
Vium3786g00001 308 MobiDBLite consensus disorder prediction 1 54 - -
Vium3786g00001 308 ProSiteProfiles TRIAD supradomain profile. 116 308 IPR044066 -
Vium3786g00001 308 FunFam RBR-type E3 ubiquitin transferase 115 201 - -
Vium3786g00001 308 ProSiteProfiles Zinc finger RING-type profile. 120 165 IPR001841 -
Vium3786g00001 308 SUPERFAMILY RING/U-box 192 256 - -
Vium3786g00001 308 ProSitePatterns Zinc finger RING-type signature. 138 147 IPR017907 -
Vium3786g00001 308 SMART ibrneu5 188 250 IPR002867 GO:0008270
Vium3786g00001 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 202 IPR013083 -
Vium3786g00001 308 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 12 260 IPR031127 GO:0004842|GO:0016567
Vium3786g00001 308 MobiDBLite consensus disorder prediction 60 74 - -
Vium3786g00001 308 MobiDBLite consensus disorder prediction 86 106 - -
Vium3786g00001 308 CDD BRcat_RBR_unk 201 253 - -
Vium3786g00001 308 Pfam IBR domain, a half RING-finger domain 202 250 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3786g00001 Vium-Chr3786 2768 3912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3786g00001 120 257 C3H Transcription Factor Family AT2G19610 24.324 1.16e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3786g00001 K11975 - gmx:100816161 254.603