Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3784g00001 ATGGCAATGGCTGCTGTTCTGCGTCGCGAAGGGAGGCGTTTGACCCAACCAATCAACGCTCTCCATTCCTCTCTCATCTCTCAAGACCAAGCTCCTCATGGTTCGCGCTCCGTTTCCACCCAAGTAGTGAGGAACCGAATGAAGAGTGTGAAGAATATCCAGAAAATCACCAAGGCCATGAAGATGGTTGCCGCATCCAAGCTTCGAGCCGTTCAAACAAGAGCTGAAAATTCCCGTGGCCTCTGGCAACCATTCACTGCCTTTCTCGGTGACAATCCAAGTGCTGATGTTAAGAAGAATGTTGTTGTTACCGTTTCCTCGGACAAAGGTCTTTGTGGTGGAATCAATTCCACATCTGTCAAGATAAGCAGGGTTTTGCACAAATTGAATTCCGGGCCTGATAAAGAGACAAAATATGTCATACTGGGAGAGAAGGCTAAGGCTCAATTGGTACGTGACTCAAAGAAAAATATCGAGCTCTCCCTTACTGAATTGCAGAAGAATCCTCTGAATTACACTCAGGTGTCTGTCTTGGCAGATGACATTCTAAAGAATGTGGAGTATGATGCATTAAGGATTGTTTTCAACAAATTTCATTCTGTTGTTTCATTTTTGCCAACAGTGTCAACTATACTATCTCCTGAGGTTATCGAGAGAGAGGCTGAATCAGGAGGAAAGCTTGGGGAACTAGATTCATATGAGATTGAAGGTGGCGAGACAAAATCTGAAATTCTTCAGAATCTGGCTGAGTTCCAGTTTTCTTGTGTAAGTAATTTTAAAAACATTCTGACAAAATAG 798 0.4336 MAMAAVLRREGRRLTQPINALHSSLISQDQAPHGSRSVSTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTAFLGDNPSADVKKNVVVTVSSDKGLCGGINSTSVKISRVLHKLNSGPDKETKYVILGEKAKAQLVRDSKKNIELSLTELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFHSVVSFLPTVSTILSPEVIEREAESGGKLGELDSYEIEGGETKSEILQNLAEFQFSCVSNFKNILTK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3784g00001 265 CDD F1-ATPase_gamma 39 253 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium3784g00001 265 PANTHER ATP SYNTHASE GAMMA CHAIN 28 256 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium3784g00001 265 Pfam ATP synthase 41 253 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium3784g00001 265 FunFam ATP synthase subunit gamma 63 264 - -
Vium3784g00001 265 PRINTS ATP synthase gamma subunit signature 189 206 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium3784g00001 265 PRINTS ATP synthase gamma subunit signature 97 116 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium3784g00001 265 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 40 253 IPR035968 GO:0015986|GO:0045261|GO:0046933
Vium3784g00001 265 Gene3D - 94 228 - -
Vium3784g00001 265 Gene3D ATP synthase, gamma subunit, helix hairpin domain 38 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3784g00001 Vium-Chr3784 1 9644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3784g00001 17 212 Primary Pumps ATPases AT1G15700 30.317 1.45e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3784g00001 K02136 - gmx:100813657 461.84