Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3782g00012 ATGAAAGACATAGGAGGAGGTGGTGCCATTATTCCAGTTAATGGATCTAACCCTTCAAAGTCTTCTGTTGGTCCTCCTTTGACAGCCATAGAGAGGTTTTTGTGGGGACAACAGAGCCATTCCTCTCAGCAACAGCCACAGAATGTTGCAAACAATATCCATGCAAGTGTTTTGGATGGTTTTGGTGGCTCAAACTACAACATTTTTTGGCATAATGGTGGTAGGGAAGTGAACTTTGTTGAAAAGCTTTTAGCAAATGAAGTGGAAGGTCTGAATTGGACACAACAAGTACCTCCACTGTGTTTGAAAGAAGATTTGCTTGTGTCGGGAAAGAACAGAAAAGGGGTGGGACGAAAACCTAAGGAAGGGTCTTCTATACCTTGGATCAAAGGCCAGTGGACTGAAGAAGAAGACAGGAAACTGCTAAAGTTGGTGAAGCAACATGGTACAGGAAAATGGTCTCAGATAGCAGAAAAGTTGGATGGAAGAGCTGGGAAGCAGTGTAGAGAGAGATGGCATAATCATCTGCGTCCTGATATTAAGAAAGATGCTTGGAGTGAAGAAGAAGAAAAAATCTTAGTAAAATATCATGCAGAGTTTGGAAATCGATGGGCAGAAATTGCTAAACAGATAAAAGGAAGAACCGAAAATGCAATAAAAAACCATTGGAATGCCACAAAGAGGAGACAAAACTCAAGAAGAAAGAACAAAAGAGCAGGAATGGGAAATGGAAAGCCATTGTCCTCTATTCTGCAAGACTACATCAAAAGTCTGTCTCTCAGCAACACTTCAAATCCCTCTGTGGAACAAACATCAGCATCACAACAGTTATCTGATATTGCCACCAACAGCAGCAATTTCTCACTAATGTCTGAGTCCTATGATGATGAGATTTCCTTCATGCAACAATTTTTCGATGAAAACAATGTCATTGCTGAATCTGTTAAGCAGACCAAAACTTTGAACAACTCTTCTGCAGGCTTTAATGGTTATCATCATCAAAGCAGTAACAATAGTCAGTTTCTCACTGAACTCACTCAATCAGGATCTGTTGTTCATTCAAACTCACAAATGTCCTTTGATGAGAGTCTTTTCCTCTCTAAAAGGACTCCTATAGGTTTTGATGTCTGTCTCTCTCATGGAACTGCTGCTTCATCATTTCTCTGCAATAATGGGATTCACAACCAGAACATGGAATTCGTTTTTTCTAATTCTCAGTTTTTGCACAGTAAGAACATCTTAACTTAA 1248 0.3982 MKDIGGGGAIIPVNGSNPSKSSVGPPLTAIERFLWGQQSHSSQQQPQNVANNIHASVLDGFGGSNYNIFWHNGGREVNFVEKLLANEVEGLNWTQQVPPLCLKEDLLVSGKNRKGVGRKPKEGSSIPWIKGQWTEEEDRKLLKLVKQHGTGKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDAWSEEEEKILVKYHAEFGNRWAEIAKQIKGRTENAIKNHWNATKRRQNSRRKNKRAGMGNGKPLSSILQDYIKSLSLSNTSNPSVEQTSASQQLSDIATNSSNFSLMSESYDDEISFMQQFFDENNVIAESVKQTKTLNNSSAGFNGYHHQSSNNSQFLTELTQSGSVVHSNSQMSFDESLFLSKRTPIGFDVCLSHGTAASSFLCNNGIHNQNMEFVFSNSQFLHSKNILT 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3782g00012 415 ProSiteProfiles Myb-like domain profile. 130 176 IPR001005 -
Vium3782g00012 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 231 IPR017930 -
Vium3782g00012 415 MobiDBLite consensus disorder prediction 226 247 - -
Vium3782g00012 415 SUPERFAMILY Homeodomain-like 127 223 IPR009057 -
Vium3782g00012 415 PANTHER MYB PROTEIN-RELATED 118 276 - -
Vium3782g00012 415 MobiDBLite consensus disorder prediction 226 240 - -
Vium3782g00012 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 180 IPR017930 -
Vium3782g00012 415 SMART sant 181 229 IPR001005 -
Vium3782g00012 415 SMART sant 129 178 IPR001005 -
Vium3782g00012 415 FunFam Transcriptional activator Myb isoform A 129 182 - -
Vium3782g00012 415 CDD SANT 184 227 IPR001005 -
Vium3782g00012 415 Gene3D - 183 245 - -
Vium3782g00012 415 Gene3D - 129 181 - -
Vium3782g00012 415 ProSiteProfiles Myb-like domain profile. 177 227 IPR001005 -
Vium3782g00012 415 MobiDBLite consensus disorder prediction 1 23 - -
Vium3782g00012 415 Pfam Myb-like DNA-binding domain 133 191 - -
Vium3782g00012 415 CDD SANT 133 176 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3782g00012 Vium-Chr3782 83818 86494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3782g00012 23 336 MYB Transcription Factor Family AT5G58850 38.827 1.02e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3782g00012 Myb_DNA-bind_6 9.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3782g00012 K09422 - gmx:100786295 444.891