Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3782g00006 ATGGCATCATCCATTGCCACCTTCTTCAACAAGTTCCTTTATCTCCTCATCCTCTTGGTCCACCTTGGCTGCTTCATCTTCACCACCACCGCCGGAGGAAAAAAAACGCCACCATCAAAGAAACGCAAAATCTCACCCTCCTCCCCTTCCCACCCAAAATTCAAAACCCACAAAGCCCTGTCCTCTTCTTGGCATTTCATTAAACACCTTCTTTCCACCAAATCCTGCAAAACCCCCAAAACCGCCACCTCCCAATTATCCCCTCAATCTACCGCCCCCACCTCCACAACCTCCGTCTCCCCCGCAGCAGCACACTCCCTCGTTTCACTAACACAACCCGACCCGGACAGAAAACAACCCGGGTCTTGTCCCGAATCCGACATTTCCGCCGACACCAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACCGCCTGCGGCGAGATCTTCCAGAAACCCCACCTCTTGGAAACCCACCAAACCCTTAAACACGCGGTTTCGGACCTATCCGGATCCGACCCAGGTCACAACATCGTCCAGATCATCTTCAAATCGGGTTGGCCTGAATCCAAACCCTCCCCCACCATAACCCGCATCCTCAAGATCCACAACAGCCCAAAGATCCTCGCCAAGTTCGAGGAGTACCGCGAGGTCGTCAAGTCCAAAGCGGCGCGTCACGGATCCCTCACGCGCCGCCGCGACGAGCGCTGCATCGCCGACGGGAACGAGCTCATGCGCTTCCACTGCTCCACGTTTCTGTGCGACTTGGGACACAGTGGGGATTCGTCAATTTGTTCTCAGCAATTTTGTAATATATGTGGAATTATTAAGTCGGGGTTTTCCCCTAAACTCGACGGAATTGCCACGCTGTCCACCAGCTGGCGTGCACACGTGGCTATACCAGATGACGTGGAACGAGAATTCGGCTTCATGAATGTCAAACGGGCCATGCTCGTTTGTAGGGTCATTGCGGGTCGGGTTGGATCCGATTCAGACGACGCCGAAAAAGCTGATGGTGGTTTTGATTCGGTAATGGCGAGGTCAGAGACTGGAGTTTACACGCGGCTTGACGAGGAGGAGTTGTTGGTGTTTAATCCTAGGGCTGTTCTTCCTTGCTTCGTGATTGTGTATACTGTGTGA 1146 0.5358 MASSIATFFNKFLYLLILLVHLGCFIFTTTAGGKKTPPSKKRKISPSSPSHPKFKTHKALSSSWHFIKHLLSTKSCKTPKTATSQLSPQSTAPTSTTSVSPAAAHSLVSLTQPDPDRKQPGSCPESDISADTNLFFPLRNDIFPCTACGEIFQKPHLLETHQTLKHAVSDLSGSDPGHNIVQIIFKSGWPESKPSPTITRILKIHNSPKILAKFEEYREVVKSKAARHGSLTRRRDERCIADGNELMRFHCSTFLCDLGHSGDSSICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPDDVEREFGFMNVKRAMLVCRVIAGRVGSDSDDAEKADGGFDSVMARSETGVYTRLDEEELLVFNPRAVLPCFVIVYTV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3782g00006 381 MobiDBLite consensus disorder prediction 32 55 - -
Vium3782g00006 381 Gene3D - 166 380 - -
Vium3782g00006 381 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 63 379 - -
Vium3782g00006 381 MobiDBLite consensus disorder prediction 79 98 - -
Vium3782g00006 381 SUPERFAMILY ADP-ribosylation 170 380 - -
Vium3782g00006 381 ProSitePatterns Zinc finger C2H2 type domain signature. 145 166 IPR013087 -
Vium3782g00006 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 167 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3782g00006 Vium-Chr3782 68371 70749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3782g00006 87 381 C2H2 Transcription Factor Family AT2G29660 59.211 2.77e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3782g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3782g00006 - - var:108341815 714.146