Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3779g00022 ATGGCGCAAATTCTGCTTCATGGTACTCTCCATGCTACCATCTATGAGGTTGATAAGCTCAATGCTGGTGGCGGCGGCAATTTTTTCAGCAAGCTCAAGCAAAACATTGAGGAGACTGTAGGTATTGGAAAGGGAGTTACTAAGCTCTATGCAACCATTGATCTGGAGAAGGCAAGAGTAGGAAGGACTAGAATTTTAGAAAATGAACATACTAATCCCAAATGGGATGAGTCTTTTCACATTTATTGTGCCCATGTGGCTTCAGATATTATATTCACTGTGAAAGATGATAATCCTATTGGGGCAACATTAATTGGAAGAGCATATGTGCCAGTTTCTGAGGTCTTGGATGGTAATGAAATAGATAAGTGGGTTGAAATCTTGGACACAGAGAAAAACCCAATAGAAGGGGGTTCAAAGATCCATGTGAGGCTGCAATATTTTGATGTAGCAAAAGACCGCAACTGGGCTCGAGGAATTAGAAGTCCAAAATACCCTGGAGTTCCCTATACTTTCTTCTCACAGAGGCAAGGATGTAAGGTATTTCTGTACCAAGATGCTCATGTACCTGATAACTTTGTACCTAAAATACCTCTTGCTGGAGGCAAGAATTATGAGGCTCATAGGTGTTGGGAGGATATATTTGATGCGATCACTAATGCAAAACACTTTATATACATTACTGGTTGGTCTGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGGCGGCCAAAGCCTGGGGGAGACCAAACAATTGGTGAACTTCTCAAGCAAAAGGCAAGTGAAGGTGTTAGGGTATTGATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACCGAGCAGTTTTTCAGGGACACTGATGTGCACTGTGTTTTATGCCCCCGCAATCCTGACGATGGCGGGAGCATTGTTCAAGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTGGTGGTTGACGGTGCTTTGCCTGGTGGAGGAGGGTCAGAGAAGCGAAGAATTGTGAGTTTCGTTGGGGGTCTTGACCTCTGTGATGGAAGATATGACACTGCCTTCCACTCACTTTTCAGAACCCTGGACACAGCACACCATGATGATTTTCATCAGCCTAACTTTCCTGGTGCTGCAATCACAAAAGGTGGTCCCAGGGAACCATGGCATGACATTCACTCCCGGCTTGAAGGACCCATAGCTTGGGATGTTTTGTTCAACTTTGAGCAGAGATGGAAAAAGCAAGGTGGGAAGGATATACTTGCTCCACTGAGAGAGCTAGAAGATGTCATTATTCCCCCATCCCCAGTAACGTTTCCTGAAGATCATGAGACCTGGAATGTTCAGTTGTTTAGATCTATTGATGGTGGGGCTGCTTTTGGGTTCCCAGATACTCCTGAAGATGCTGCCAAAGCCGGGCTTGTTAGTGGGAAGGACAACATCATTGATCGTAGCATTCAAGATGCTTATATTCACGCGATTCGACGAGCTAAGAATTTCATCTATATTGAAAATCAATATTTCCTTGGAAGCTCTTTTTCCTGGAGCTCTGATGATATTAAGCGTGAAGAGATTGGTGCATTGCATCTAATCCCAAAGGAACTTTCCCTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTTGCCGTGTATGTTGTAGTCCCTATGTGGCCAGAGGGTATCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAAAGGAGAACAATGGAGATGATGTACAAGGACGTTGTTCAGGCACTCAGAGCTAAAGGAAGTGATGAAGATCCCCGAAACTATTTGACATTCTTCTGCCTTGGAAACCGGGAGGTGAAAAAATCAGGAGAATATGAGCCTGCTGAACAACCAGATCCTGATTCAGATTATCAGAGAGCTCAAGAAGCCCGGCGTTTCATGATTTATGTTCATACCAAGATGATGATCGTTGACGATGAATACATAATCATTGGATCTGCCAACATCAACCAGAGGTCAATGGATGGGGCTAGGGACTCTGAGATTGCCATGGGTGGTTATCAGCCATATCATTTGGCTACGACACAGCCGGCACGTGGCCAAGTCCATGGTTTCCGCCTGTCATTGTGGTATGAGCACCTTGGCATGCTTCACGACTCCTTCCAGAAGCCAGAAAGTGAAGAATGCATCAATAAGGTGAACCAGATTGCAGACAAATATTGGGATCTGTATTCTAGTGAGTCACTTGAGCGTGACCTTCCCGGTCACCTTCTACGCTACCCTATTGGTGTTGCCAGTGAAGGAGACGTCACTGAGCTGCCAGGATTTGAATTCTTCCCAGACACCAAGGCTCGGATTCTTGGTGCCAAAGCTGACTACCTCCCCCCTATCCTCACTACCTAG 2430 0.4449 MAQILLHGTLHATIYEVDKLNAGGGGNFFSKLKQNIEETVGIGKGVTKLYATIDLEKARVGRTRILENEHTNPKWDESFHIYCAHVASDIIFTVKDDNPIGATLIGRAYVPVSEVLDGNEIDKWVEILDTEKNPIEGGSKIHVRLQYFDVAKDRNWARGIRSPKYPGVPYTFFSQRQGCKVFLYQDAHVPDNFVPKIPLAGGKNYEAHRCWEDIFDAITNAKHFIYITGWSVYTEISLVRDSRRPKPGGDQTIGELLKQKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEQFFRDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDGALPGGGGSEKRRIVSFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDILAPLRELEDVIIPPSPVTFPEDHETWNVQLFRSIDGGAAFGFPDTPEDAAKAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFSWSSDDIKREEIGALHLIPKELSLKIVSKIEAGERFAVYVVVPMWPEGIPESASVQAILDWQRRTMEMMYKDVVQALRAKGSDEDPRNYLTFFCLGNREVKKSGEYEPAEQPDPDSDYQRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLATTQPARGQVHGFRLSLWYEHLGMLHDSFQKPESEECINKVNQIADKYWDLYSSESLERDLPGHLLRYPIGVASEGDVTELPGFEFFPDTKARILGAKADYLPPILTT 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3779g00022 809 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 365 IPR001736 GO:0003824
Vium3779g00022 809 SUPERFAMILY Phospholipase D/nuclease 454 739 - -
Vium3779g00022 809 Pfam Phospholipase D Active site motif 326 365 IPR001736 GO:0003824
Vium3779g00022 809 Pfam Phospholipase D Active site motif 656 682 IPR001736 GO:0003824
Vium3779g00022 809 Gene3D Endonuclease Chain A 480 698 - -
Vium3779g00022 809 PANTHER PHOSPHOLIPASE D 4 797 IPR015679 -
Vium3779g00022 809 FunFam Phospholipase D delta 201 445 - -
Vium3779g00022 809 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Vium3779g00022 809 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 655 682 IPR001736 GO:0003824
Vium3779g00022 809 Gene3D Endonuclease Chain A 199 441 - -
Vium3779g00022 809 Pfam Phospholipase D C terminal 728 799 IPR024632 -
Vium3779g00022 809 PIRSF PLD_plant 1 809 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vium3779g00022 809 FunFam Phospholipase D 468 701 - -
Vium3779g00022 809 Gene3D C2 domain 7 158 IPR035892 -
Vium3779g00022 809 SUPERFAMILY Phospholipase D/nuclease 152 445 - -
Vium3779g00022 809 Pfam C2 domain 9 127 IPR000008 -
Vium3779g00022 809 CDD PLDc_pPLDalpha_2 493 702 - -
Vium3779g00022 809 SMART pld_4 326 365 IPR001736 GO:0003824
Vium3779g00022 809 SMART pld_4 655 682 IPR001736 GO:0003824
Vium3779g00022 809 SMART C2_3c 9 124 IPR000008 -
Vium3779g00022 809 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Vium3779g00022 809 CDD C2_plant_PLD 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3779g00022 Vium-Chr3779 96289 100454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3779g00022 1 809 Phospholipase D Gene Family (Wang group) AT3G15730 82.963 0.0 1428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3779g00022 K01115 - gmx:100786410 1567.36