Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3779g00021 ATGTCTTTCACATTCTCTGTCACAAATTCCATATCCTTCTTTATCTCTCTCTCTCTCAACATGGTGCAATCAAGGAAATTCAGAGGTGTAAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGTCACCCATTATTGAAAAGAAGGGTGTGGCTTGGGACATTCGAGACAGCCGAGGAAGCAGCAAGAGCATACGATGAAGCAGCCATTTTGATGAGTGGAAGAAACGCTAAAACAAACTTCCCAGTTGGTGAAAACCAGGTTTTGAATCACAGCACTTCCTCTTCTTCATCTTCCACCTCTACATTGTCTGCAGTTCTGAGTGCAAAGCTTAGGAAGTGCTGCAAATCTCCCTCACCTTCCCTCACTTGCCTGAGGCTTGACACTGAGAATTCCCACATAGGGGTGTGGCAGAAGAGAGCAGGCCCTCGTTCTGACTCTAACTGGATCATGATGGTTGAGTTGGAAAAAAAGAACAGCGAGGGTGATCATGATCATGATCATGATCAAGATCAAGATCAAGATCAAGGTCGTTCTTCTGATTCTGAAGTTCCTGTTGTTGTTGTTGATCATCATGCTCCAGAGAAGATAAAGCCTGAGGAAGGTAATGGATTAGATGAGGAGCAGAGAATGGCTCTGCAGATGATAGAGGAGCTTCTGAATAGGAATTGA 675 0.4504 MSFTFSVTNSISFFISLSLNMVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVGENQVLNHSTSSSSSSTSTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELEKKNSEGDHDHDHDQDQDQDQGRSSDSEVPVVVVDHHAPEKIKPEEGNGLDEEQRMALQMIEELLNRN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3779g00021 224 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Vium3779g00021 224 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Vium3779g00021 224 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 172 - -
Vium3779g00021 224 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Vium3779g00021 224 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Vium3779g00021 224 MobiDBLite consensus disorder prediction 161 179 - -
Vium3779g00021 224 MobiDBLite consensus disorder prediction 189 209 - -
Vium3779g00021 224 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Vium3779g00021 224 Pfam AP2 domain 26 74 IPR001471 GO:0003700|GO:0006355
Vium3779g00021 224 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vium3779g00021 224 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Vium3779g00021 224 MobiDBLite consensus disorder prediction 161 209 - -
Vium3779g00021 224 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3779g00021 Vium-Chr3779 80026 81265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3779g00021 21 224 AP2-EREBP Transcription Factor Family AT1G15360 59.813 4.68e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium3779g00021 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3779g00021 - - gmx:100796962 311.997