Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3779g00019 ATGGGAAGGGCTTTTCGGACTATTCACGGTAGCACACGCTATATCTTCTCGTCCCTGCTCAACTCGCTGTTACTCTTCCTAAAACCCAGAACCAGATCTAGGGTTTATTTTCAATCTCCTCCTCAACAACTATTTCCGTTGCGTCTTCGAAGAATCAGGATGGGAGAATTGAAGGACACCGAGGCTTACGAGGAAGAGCTCCTTGATTACGAAGAAGAAGACGAGAAAGCTCCCGATTCTGCCAAGCCTGCAGAATCCGGCAAGAAGGGCTATGTTGGCATCCATAGTTCGGGTTTTCGAGACTTTTTGTTGAAGCCAGAGCTTCTGCGAGCCATTGTAGATTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATCCCTCAAGCAATCTTAGGAATGGATGTCATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTCTTTGTTCTTTCTACACTTCAGCAAGTTGATCCTGTTCCTGGTCAAGTTGCAGCTCTAGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCATGAATTTGAGAGATTCAGCACATATCTTCCTGATATAAAGGCTGCTGTTTTCTATGGTGGCGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCTCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTAAAGAACGTGAGGCATTTCATACTTGATGAGTGCGACAAGATGCTTGAATCACTTGATATGAGAAGAGACGTCCAGGAGATTTTCAAATTGACTCCTCATGATAAACAAGTGATGATGTTTTCAGCTACACTTAGTAAAGAGATTCGACCTGTTTGCAAGAAATTTATGCAAGATCCTATGGAAATCTATGTGGATGATGAGGCCAAGTTGACGCTTCATGGTCTTGTCCAGCACTACATCAAATTGCAAGAGTCAGAGAAGAACAGGAAGTTGAATGATCTTCTTGATGCTTTGGACTTCAACCAAGTAGTTATTTTTGTCAAGAGTGTTAGCAGAGCAGCAGAGTTGAACAAGTTGCTTGTGGAATGTAACTTCCCATCCATCTGCATACATTCTGCAATGTCACAGGAAGAGAGATTGAAACGATACAAAGGCTTCAAGGAAGGGAAGCAAAGGATTCTCGTGGCAACTGACTTAGTAGGGAGGGGGATTGACATAGAACGTGTTAATATAGTTATTAATTATGACATGCCTGATTCTGCGGATACTTACTTGCACAGGGTAGGAAGAGCAGGTAGATTTGGCACGAAGGGGCTTGCTATTACTTTTGTCTCCTCCACTGCCGACTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAAGTTGATATTAAGGAGCTTCCTGAACAAATTGACACTTCGACATACATGCCAAATTGA 1437 0.428 MGRAFRTIHGSTRYIFSSLLNSLLLFLKPRTRSRVYFQSPPQQLFPLRLRRIRMGELKDTEAYEEELLDYEEEDEKAPDSAKPAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3779g00019 478 CDD SF2_C_DEAD 314 443 - -
Vium3779g00019 478 SMART ultradead3 116 317 IPR014001 -
Vium3779g00019 478 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 97 125 IPR014014 GO:0003724
Vium3779g00019 478 MobiDBLite consensus disorder prediction 69 88 - -
Vium3779g00019 478 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 301 IPR014001 -
Vium3779g00019 478 FunFam DEAD-box ATP-dependent RNA helicase 310 478 - -
Vium3779g00019 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 448 IPR027417 -
Vium3779g00019 478 Gene3D - 310 478 IPR027417 -
Vium3779g00019 478 FunFam DEAD-box ATP-dependent RNA helicase 56-like 85 303 - -
Vium3779g00019 478 Gene3D - 93 309 IPR027417 -
Vium3779g00019 478 CDD DEADc_DDX39 96 303 - -
Vium3779g00019 478 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 95 452 - -
Vium3779g00019 478 Pfam Helicase conserved C-terminal domain 327 434 IPR001650 -
Vium3779g00019 478 SMART helicmild6 353 434 IPR001650 -
Vium3779g00019 478 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 474 IPR001650 -
Vium3779g00019 478 Pfam DEAD/DEAH box helicase 122 287 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3779g00019 Vium-Chr3779 65372 70237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3779g00019 54 478 Eukaryotic Initiation Factors Gene Family AT5G11200 82.692 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3779g00019 K12812 - gmx:100799082 825.469