Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3779g00018 ATGGGAAGGGCTTTTCGGACTATTCACGGTAGCACACGCTATATCTTCTCGTCCCTGCTCAACTCGCTGTTACTCTTCCTAAAACCCAGAACCAGATCTAGGGTTTATTTTCAATCTCCTCCTCAACAACTATTTCCGTTGCGTCTTCGAAGGATGGGAGAATTGAAGGACACCGAGGCTTACGAGGAAGAGCTCCTTGATTACGAAGAAGAAGACGAGAAAGCTCCCGATTCTGCCAAGCCTGCAGAATCCGGCAAGAAGGGCTATGTTGGCATCCATAGTTCGGGTTTTCGAGACTTTTTGTTGAAGCCAGAGCTTCTGCGAGCCATTGTAGATTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATCCCTCAAGCAATCTTAGGAATGGATGTCATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTCTTTGTTCTTTCTACACTTCAGCAAGTTGATCCTGTTCCTGGTCAAGTTGCAGCTCTAGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCATGAATTTGAGAGATTCAGCACATATCTTCCTGATATAAAGGCTGCTGTTTTCTATGGTGGCGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCTCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTAAAGAACGTGAGGCATTTCATACTTGATGAGTGCGACAAGATGCTTGAATCACTTGATATGAGAAGAGACGTCCAGGAGATTTTCAAATTGACTCCTCATGATAAACAAGTGATGATGTTTTCAGCTACACTTAGTAAAGAGATTCGACCTGTTTGCAAGAAATTTATGCAAGATCCTATGGAAATCTATGTGGATGATGAGGCCAAGTTGACGCTTCATGGTCTTGTCCAGCACTACATCAAATTGCAAGAGTCAGAGAAGAACAGGAAGTTGAATGATCTTCTTGATGCTTTGGACTTCAACCAAGTAGTTATTTTTGTCAAGAGTGTTAGCAGAGCAGCAGAGTTGAACAAGTTGCTTGTGGAATGTAACTTCCCATCCATCTGCATACATTCTGCAATGTCACAGGAAGAGAGATTGAAACGATACAAAGGCTTCAAGGAAGGGAAGCAAAGGATTCTCGTGGCAACTGACTTAGTAGGGAGGGGGATTGACATAGAACGTGTTAATATAGTTATTAATTATGACATGCCTGATTCTGCGGATACTTACTTGCACAGGGTAGGAAGAGCAGGTAGATTTGGCACGAAGGGGCTTGCTATTACTTTTGTCTCCTCCACTGCCGACTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAAGTTGATATTAAGGAGCTTCCTGAACAAATTGACACTTCGACATACATGCCAAATTGA 1431 0.4284 MGRAFRTIHGSTRYIFSSLLNSLLLFLKPRTRSRVYFQSPPQQLFPLRLRRMGELKDTEAYEEELLDYEEEDEKAPDSAKPAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3779g00018 476 Pfam Helicase conserved C-terminal domain 325 432 IPR001650 -
Vium3779g00018 476 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 472 IPR001650 -
Vium3779g00018 476 Gene3D - 91 307 IPR027417 -
Vium3779g00018 476 CDD DEADc_DDX39 94 301 - -
Vium3779g00018 476 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 299 IPR014001 -
Vium3779g00018 476 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 95 123 IPR014014 GO:0003724
Vium3779g00018 476 FunFam DEAD-box ATP-dependent RNA helicase 56-like 83 301 - -
Vium3779g00018 476 Gene3D - 308 476 IPR027417 -
Vium3779g00018 476 SMART ultradead3 114 315 IPR014001 -
Vium3779g00018 476 FunFam DEAD-box ATP-dependent RNA helicase 308 476 - -
Vium3779g00018 476 CDD SF2_C_DEAD 312 441 - -
Vium3779g00018 476 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 93 450 - -
Vium3779g00018 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 446 IPR027417 -
Vium3779g00018 476 MobiDBLite consensus disorder prediction 67 86 - -
Vium3779g00018 476 Pfam DEAD/DEAH box helicase 120 285 IPR011545 GO:0003676|GO:0005524
Vium3779g00018 476 SMART helicmild6 351 432 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3779g00018 Vium-Chr3779 65372 70237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3779g00018 52 476 Eukaryotic Initiation Factors Gene Family AT5G11200 82.692 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3779g00018 K12812 - gmx:100799082 825.469