Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3775g00001 ATGGCTATGGCAGCCCCTGGGCAACTCAACGTGAACGAGTCACCGTCGTGGGGGTCCAGAAGCGTCGATTGCTTCGAGAAGTTGGAGCAAATTGGCGAGGGCACATATGGTCAAGTTTACATGGCTAGAGAGATCAAAACTGGCGAAATTGTTGCTCTGAAAAAGATACGAATGGACAATGAGAGAGAAGGGTTTCCTATAACAGCTATTCGTGAAATCAAAATTCTAAAGAAGCTACACCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACTTCTCCAGGACCTGAGAAAGATGAACAAGGGAGGCCAGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGACCGACCAGGGATGAGATTCACAGTTCCCCAAATTAAGTGCTACATGCGACAGCTTCTGACTGGGCTGCATTATTGTCATGTAAATCAAGTACTTCACCGTGATATCAAAGGTTCAAATCTTCTCATAGATAATGAAGGTAATCTGAAACTTGCTGATTTTGGATTGGCACGGTCATTTTCTAATGAGCACAATGCAAATCTTACTAATCGTGTCATCACATTATGGTACAGACCCCCTGAGCTGCTGCTTGGGACAACGAGGTATGGGCCAGCTGTAGACATGTGGTCTGTGGGGTGCATCTTCGCAGAGCTTCTTCATGGGAAGCCTATATTTCCTGGAAAAGATGAGCCCGAACAATTAAATAAGATTTTCGAGCTGTGTGGAGCACCAGATGAAGTGAACTGGCCTGGTGTTTCTAAGACTCCTTGGTATAATCAGTTTAAGCCAACAAGACCAATGAAAAGACGTCTACGGGAAGTTTTCAGACATTTTGATCGTCATGCTCTGGAATTGTTGGAGAAGATGCTGACACTTGATCCTGCTCAGAGAATTACTGCGAAGGATGCGCTCGATGGTGAATACTTCTGGACTGATCCATTACCATGTGATCCTAAGAGTTTACCCAAATATGAGTCATCTCATGAGTTCCAAACCAAGAAAAAGCGCCAGCAGCAACGACAAAATGAAGAAAATGCCAAGCGTCTTAAAATGCAGCATCCTCAACAGCATTCACGCCTGCCCCCTATTCAGCAGGCTGGACAACAGCACCCTCAAATGCGGCAAGGTCCTAACCACCCTATTCACGGGTCTCAACCAGGAGTTACGGCTGGGTCTAGCCATCATTATGGGAAGCCTCGAGGTCCCTCTGGTGGGCCTGGACGATATCCTCCTGGTGGAAACCCTGGTGGGGGATACAATCACCCAAATCGTGGAGGTCAAGGAGGAGGAGGTGGTAGTTATGGCAGTGGGCCGTATCCTCCCCAAGGACGGGGTGCATCTTATGGTTCAAGTGGTATGCCTGGTGGTTCCAGTGGCGGTCCTCGTGGTGGGGGTGGTAGTGGCTATGGTGTTGGAGCTCCAAATTATCCTCAAGGTGCTCCTTATGGTGGATCAGCAGCAGGACGTGGTTCAAACATGATGGGGGGTAACCGCAACCAACAGTATGGTTGGCAGCAGTAA 1566 0.4719 MAMAAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPAQRITAKDALDGEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKMQHPQQHSRLPPIQQAGQQHPQMRQGPNHPIHGSQPGVTAGSSHHYGKPRGPSGGPGRYPPGGNPGGGYNHPNRGGQGGGGGSYGSGPYPPQGRGASYGSSGMPGGSSGGPRGGGGSGYGVGAPNYPQGAPYGGSAAGRGSNMMGGNRNQQYGWQQ 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3775g00001 521 MobiDBLite consensus disorder prediction 372 394 - -
Vium3775g00001 521 PANTHER CELL DIVISION PROTEIN KINASE 23 330 - -
Vium3775g00001 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Vium3775g00001 521 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Vium3775g00001 521 MobiDBLite consensus disorder prediction 507 521 - -
Vium3775g00001 521 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Vium3775g00001 521 CDD STKc_CDK9_like 25 324 - -
Vium3775g00001 521 FunFam Cyclin-dependent kinase C-2 12 121 - -
Vium3775g00001 521 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3775g00001 521 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Vium3775g00001 521 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3775g00001 521 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
Vium3775g00001 521 FunFam Cyclin-dependent kinase C-2 122 364 - -
Vium3775g00001 521 MobiDBLite consensus disorder prediction 335 521 - -
Vium3775g00001 521 MobiDBLite consensus disorder prediction 337 366 - -
Vium3775g00001 521 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3775g00001 Vium-Chr3775 32384 50190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3775g00001 1 521 Core Cell Cycle Gene Families AT5G10270 76.806 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium3775g00001 Pkinase 4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3775g00001 K08819 - gmx:100793565 909.057