Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium376g00002 ATGGAACGTGGAGTTCTTGATGGCATAATCAATAGACTGCTTCAAGTCAGAGGGAGACCAGGGAAACAGGTGCAGCTCTCAGAGGGAGAAATCAAACAGCTTTGTATGGTTTCTAGGGATATCTTCTTGAAGCAGCCCAATCTCTTAGAACTTGAGGCACCAATTAAGATATGTGGAGACATCCATGGTCAATATTCTGACCTTCTAAGACTTTTTGAGCATGGTGGTTTGCCTCCTCGCTCCAACTACTTATTCTTAGGTGATTATGTGGACCGTGGAAAGCAAAGTCTAGAGACAATATGTCTTCTTTTGGCCTACAAGATGAAGTACCCTGAGAACTTTTTCCTTCTTAGGGGAAACCATGAATGTGCTTCCATAAACCGTGTCTATGGGTTCTATGATGAATGTAAACGAAGATTCAATGTCAAGCTGTGGAAAATATTCGCAGATTGCTTCAACTGCATGCCTGTGGCAGCCATCATTGATGAAAAAATCTTGTGCATGCATGGAGGACTCTCTCCCGAACTGCACAATCTAAGTCAGATAAACTCTTTGCCACGTCCAACAGAAGTACCTGACAGTGGTCTACTCTGTGATCTCTTGTGGTCTGATCCTAGTAAAGACTCCGAGGGTTGGGGAGAGAGTCAACGTGGAGTTTCATACACTTTTGGTGCCAGCTTGGTCACACAATTTCTTGGAAAGCATGATCTTGACTTGATTTGTAGAGCACACCAGGTTGTTGAGGATGGATATGAGTTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCTCCTAACTACTGTGGAGAGTTTGACAATGCTGGAGCTATGATGACTGTCGATGAGACACTTATGTGCTCTTTTCAGATACTGAGGCCAGTGGAAAACAGAAAGCCTAAGTTTGGTGTTGGGAGCAAAACTTCATTCAAGGCAATTCTTGATGCTGCAAGAGTACGTCCTCATTGA 969 0.4314 MERGVLDGIINRLLQVRGRPGKQVQLSEGEIKQLCMVSRDIFLKQPNLLELEAPIKICGDIHGQYSDLLRLFEHGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKMKYPENFFLLRGNHECASINRVYGFYDECKRRFNVKLWKIFADCFNCMPVAAIIDEKILCMHGGLSPELHNLSQINSLPRPTEVPDSGLLCDLLWSDPSKDSEGWGESQRGVSYTFGASLVTQFLGKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVDETLMCSFQILRPVENRKPKFGVGSKTSFKAILDAARVRPH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium376g00002 322 Gene3D - 2 303 IPR029052 -
Vium376g00002 322 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vium376g00002 322 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vium376g00002 322 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vium376g00002 322 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vium376g00002 322 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vium376g00002 322 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vium376g00002 322 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vium376g00002 322 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 11 301 - -
Vium376g00002 322 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vium376g00002 322 SUPERFAMILY Metallo-dependent phosphatases 18 296 IPR029052 -
Vium376g00002 322 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vium376g00002 322 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Vium376g00002 322 CDD MPP_PP1_PPKL 5 294 - -
Vium376g00002 322 FunFam Serine/threonine-protein phosphatase 1 303 - -
Vium376g00002 322 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium376g00002 Vium-Chr376 40414 42483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium376g00002 33 239 Calmodulin-binding Proteins AT5G63870 31.174 1.05e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium376g00002 K06269 - gmx:100780047 620.928