Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium376g00001 ATGGATTCTTCTTCCATTCTCTATTCATCAAACTCTTCAGAATCTTCAGTGGGATCTCCTCATCACCATCTCCCTTTCAACGAAAATGATCCCGAAGAGATGCTTCTCTATGGCATGATCACATCATATCAAGAACAAAACAACTCATGCAAACTCGTCATCAAAGAAGAAGAGGTGAATTCACAACAACACAAAAGTAGTAGTAGTAATAGCAATGGTAAGAGTTTTCGAGGTGTGCGAAGACGACCATGGGGAAAGTTCGCGGCAGAGATAAGAGATTCTACTCGACATGGCATAAGGGTATGGCTTGGAACATTCGACAAAGCCGAGGCTGCAGCGTTGGCGTATGACCAAGCTGCCTTTGTCATGCGAGGCTCTGCCGCGGTACTCAACTTTTCCGTGGAGAAAGTAAAGGAGTCATTGAGAGATATGGATTGCTCATTCTCTCAACTTGAAGGTTGTTCTCCCGTTGTGGCCTTGAAGAGGAGACATTCATTGAGACGCAAAATGACTACAAAGAAAAAGAAAGAAGAGACACAAGAGAGTGATAGTGTTAGGTTAGAAAACGTGGTTGTGTTGGAAGACTTGGGAGAAGAGTATTTGGAACAATTGTTAATGATGTCTTCTAGTGATGCTAGATGTACTTGGTGA 651 0.4286 MDSSSILYSSNSSESSVGSPHHHLPFNENDPEEMLLYGMITSYQEQNNSCKLVIKEEEVNSQQHKSSSSNSNGKSFRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDKAEAAALAYDQAAFVMRGSAAVLNFSVEKVKESLRDMDCSFSQLEGCSPVVALKRRHSLRRKMTTKKKKEETQESDSVRLENVVVLEDLGEEYLEQLLMMSSSDARCTW 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium376g00001 216 FunFam Ethylene-responsive transcription factor 2 74 135 - -
Vium376g00001 216 MobiDBLite consensus disorder prediction 1 22 - -
Vium376g00001 216 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
Vium376g00001 216 CDD AP2 76 132 IPR001471 GO:0003700|GO:0006355
Vium376g00001 216 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Vium376g00001 216 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vium376g00001 216 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Vium376g00001 216 MobiDBLite consensus disorder prediction 1 28 - -
Vium376g00001 216 PANTHER DNA-BINDING DOMAIN 38 206 IPR044808 GO:0003700|GO:0009873
Vium376g00001 216 Gene3D AP2/ERF domain 74 135 IPR036955 GO:0003700|GO:0006355
Vium376g00001 216 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Vium376g00001 216 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium376g00001 Vium-Chr376 20691 21368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium376g00001 24 216 AP2-EREBP Transcription Factor Family AT3G23240 60.406 3.23e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium376g00001 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium376g00001 K14516 - gmx:100780576 262.307