Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3769g00007 ATGCAGACTCAGGAATATTTTCTCCCGGAGAAGATGGTACTTCCTTTGGCAGATGACTCCATTGATGCTAATGCTCATATGCATGCTCCACTTGCTTCTGCCTTTGATGCTTTTTTACCTCCAGCTGTGGGGCAGATAACACCCTTTGAAAGATTTAAATTGCAACCCTCTGAGGCATGCCCCAAGAATTTTGTTATCTTTGATCAAACAGATCAGCGAAGTAGGATTATGTTCAATCCTGCAATGACCTACAAATTTAATAGTCCTGGCTTAAATGTTCATGCTAATTTTTCTCAAGATTTTGAGAAGAATAAAGTCAATCAAATGGAAAGAGAATTGTCATCTCCTTTTGAAGAAGATCCTAATGACATTGATGCATTGTTGAGCATAGGAGCTGATGAACTAGAAGACTTTGATGAGGAAGAAATAAGCACAGCAAGGACTCATGAAAATTATGAAAATTTATCTGATACTTGCTCCAGTTATTGCTCAAAATCAAGGAAGAAGAGGCTGTCATCATCTTCTGTACACAAGTCTTCTGAGGCTAATGATGGGAATAACAGGGAGATAAAGAGGATGGTGAGGATGTTGAGAAAGATCGTGCCTGGTGGAGGTAATCAAATGGATTCTGTTACTGTTTTAGATGAAGCTGTCAAGTACCTAAAGTCTCTCAAAGTTGAGGTGGAACAATTTGGAGTTGAACCATGA 708 0.3898 MQTQEYFLPEKMVLPLADDSIDANAHMHAPLASAFDAFLPPAVGQITPFERFKLQPSEACPKNFVIFDQTDQRSRIMFNPAMTYKFNSPGLNVHANFSQDFEKNKVNQMERELSSPFEEDPNDIDALLSIGADELEDFDEEEISTARTHENYENLSDTCSSYCSKSRKKRLSSSSVHKSSEANDGNNREIKRMVRMLRKIVPGGGNQMDSVTVLDEAVKYLKSLKVEVEQFGVEP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3769g00007 235 MobiDBLite consensus disorder prediction 170 189 - -
Vium3769g00007 235 PANTHER TRANSCRIPTION FACTOR BHLH145 22 234 IPR037546 -
Vium3769g00007 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 231 IPR036638 GO:0046983
Vium3769g00007 235 Gene3D - 187 232 IPR036638 GO:0046983
Vium3769g00007 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 224 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3769g00007 Vium-Chr3769 10920 13869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3769g00007 16 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G29950 41.463 6.17e-41 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3769g00007 - - vra:106768906 435.647