Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3765g00003 ATGAGTTTCTATCTACTTTTTCATCTTTGGTTTCTTGCCTTTTCTTTCATCTCTTCTTCGGCTTGGGGAGCTACTCTGCCTCAAGATGAAGTGGAAGTAATGAAAGAGATAGGTAAGAGACTTGGGAAGAAGGATTGGGATTTCAACGTAGATCCATGCACTGGACAGAGAAATTGGACTTCGTCTATTCAAAATGCTGTCACTTGCAATTGCCTTTTTGCCAATGCCACTATCTGCCACGTCGTCAGCATTGTTCTGAAGTCACAAAATCTTTCGGGCACACTCCCAAGTGAACTAGTGAGATTGCCATACCTCCAAGAAATTGACCTCACCAGAAACTACCTTAATGGTACAATTCCTCCACAATGGGGCTCCATCAACCTCGTCAACATATCCATTCTCGGAAATAGGGTAACAGGTCCAATACCAAAAGAACTAGGAAACATCACAACACTGAAAAGTTTGGTGGTCGAGTTCAATCAATTATCTGGTGAGCTTCCTCTAGAGCTTGGGAATCTCCCTCAACTTGAAAGATTGCTTCTTACATCCAACTATTTTACTGGAAATTTACCTGCAACATTTGCTAGACTCACTACACTAAAACACATTCGACTTGGTGACAATCAATTTTCTGGAACTTTACCTGATTTCATTCAGAAATGGAAAAGTTTGGAGAGGCTGGTGATGCAAGGAAGTGGTTTTAGTGGTCCAATTCCTTCTGGAATTTCTCTTTTGAAGAATCTCACTGATTTGAGAATTAGCGACTTGAAAGGACCAGATTCTTCATTCCCCCAACTTAAAAACTTAACAAATTTGCAGACAATAGTACTGAGGAGTTGCAATCTCGTAGGAATGGTTCCTGAATACCTTGGAGATTTGATTGGCTTACGATCACTCGATCTCAGCTTTAACAAATTAACTGGACCGATTCCAAGAACCTTGGGTGGCCTAAACGATATAAATATGTTATATTTAACCGGAAACCATTTCAATGGACCACTACCCAACTGGATAGATAGGCCAGACTACACCGATCTGTCATACAACAATTTGAGCATCGAAAAGCCAGAGCAATTGACATGCCAACAGGGAAGCGTGAACTTATTTGCATCATCATTGAAGGGAAATAATGAGTTGGGAATGATTCCATGTCTAGGGAATATCAACTGTCCTAAAACCTGGTACTCTCTCTATGTAAATTGTGGTGGGAAGTTAATATCGAAGGGAAACATAAACTATGATGATGATTCACAAGAAGCTGGACCAGCAAGATTTCGTCGAACAGGATCAAACTGGGTATTCAGCAACACTGGTCATTTCTTTGATAGTGGTCGCGTAGACTACTATACTTGGTCTAACACAACTAAGCTTGATATGAACAATGGCGAATTGTACATGGATGCACGTGTCTCTGCACTTTCTCTCACATATTATGCATTCTGCATGGGAAATGGAAGCTACACAATAAGCCTTCATTTTGCAGAAATTATGTTCACTGATGATCAAACCTATAGCAGCCTTGGAAGGCGTATATTTGACATATATGTTCAGAGAAAGTTGGTGCTGAAGGATTTCAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAAGCAGTCATAAAAAATTTTACTGCAACTGTGAATAGCAGTACCTTAGAGATTCGGTTGCAGTGGGCTGGGAAAGGGACAACTGCTATACCTTTTGGATCAGTTCATGGTCCTCTTATATCAGCTATATCAGTTCATCCTGATTTTACACCACAAGAGGAAGATAAAGATGGTGTACCTAAGCATTATGTTGCTGGAATTGTAGTTACTGGAGCACTTGTTATCATCATTATATTTGGCATAGCTTGGTGGAGAGGATGTTTAAGGAGAAAGGTTTCGTTAGAAAAAGAACTAATGGGTGTAGATTTCCAAACTGGCTTATTTAGCTTACGACAAATCAAAGCTGCAACTAGAAACTTTGATATTAACTTCAAGATCGGAGAAGGAGGTTTTGGTCCTGTTTACAAGGGTGTTCTCTCAGATGGCACGGTAATAGCAGTGAAACAACTTTCTTCTAAATCGAGACAAGGGAATCGTGAGTTTATAAACGAGATTGGCATGATTTCTGCTTTGAAACATCCTTGTCTAGTTAAACTTTATGGTTGTTGTATGGAGGGAGATCAACTGATGCTGATATATGAATACATGGAAAACAACAGTCTTGCTCGTGCTTTATTTGCAGAAAAATCTCAATTGAAGTTGGATTGGTCAACAAGGCAAAGGATCTGTGTTGGAATTGCTAGAGGTTTGGCTTACCTTCATGGAGAGTCTAGGCTAAAGATAGTTCATAGAGACATAAAGGCCACTAATGTGTTATTAGACAAAGATCTCAACCCAAAAATATCTGATTTTGGTTTGGCCAAACTTGATGAAGAGGGCTACACACACATAACTACCAGAGTAGCTGGCACCTATGGATACATGGCTCCAGAATATGCAATGCATGGTTATTTAACTGACAAAGCAGATGTGTATAGTTTTGGCATTGTTGCCCTAGAAATTGTTAGCGGAAAGAGTAACACCTTGAACTGGCCAAAGGATGGATGTTTCTCTCTCGTTGATTTGGTGCATGTCTTGAGAGAAGAAGGTGACCTAATGGACCTAGTTGATGAGAGGTTGGGTAATGATTTTAAAAGAGAAGAAGTAGTGGTAATGATTAATGTGGCTCTTTTATGCACACAAGTTTCTCCAATGCACAGACCCACCATGGCTTCAGTTGTATGCATGCTTGAAGGAAAAACTGATGTTAAAGAGGTGGTGTTAGATACAAGAGAAGTATTGGATGTAAAGAAGTTGGAGATGCAACAATATTACAATATGAGAGAGAAAAATAAGACTCTTGCAACTCCAGAAGAGAGCATCTCAATGGGTGAGACTTCAGCATTTATGTCTGATACAGATTTATATTCTGTCAACATGGATTCTTCTTCCTAA 2979 0.3964 MSFYLLFHLWFLAFSFISSSAWGATLPQDEVEVMKEIGKRLGKKDWDFNVDPCTGQRNWTSSIQNAVTCNCLFANATICHVVSIVLKSQNLSGTLPSELVRLPYLQEIDLTRNYLNGTIPPQWGSINLVNISILGNRVTGPIPKELGNITTLKSLVVEFNQLSGELPLELGNLPQLERLLLTSNYFTGNLPATFARLTTLKHIRLGDNQFSGTLPDFIQKWKSLERLVMQGSGFSGPIPSGISLLKNLTDLRISDLKGPDSSFPQLKNLTNLQTIVLRSCNLVGMVPEYLGDLIGLRSLDLSFNKLTGPIPRTLGGLNDINMLYLTGNHFNGPLPNWIDRPDYTDLSYNNLSIEKPEQLTCQQGSVNLFASSLKGNNELGMIPCLGNINCPKTWYSLYVNCGGKLISKGNINYDDDSQEAGPARFRRTGSNWVFSNTGHFFDSGRVDYYTWSNTTKLDMNNGELYMDARVSALSLTYYAFCMGNGSYTISLHFAEIMFTDDQTYSSLGRRIFDIYVQRKLVLKDFNIAKEAGGVGKAVIKNFTATVNSSTLEIRLQWAGKGTTAIPFGSVHGPLISAISVHPDFTPQEEDKDGVPKHYVAGIVVTGALVIIIIFGIAWWRGCLRRKVSLEKELMGVDFQTGLFSLRQIKAATRNFDINFKIGEGGFGPVYKGVLSDGTVIAVKQLSSKSRQGNREFINEIGMISALKHPCLVKLYGCCMEGDQLMLIYEYMENNSLARALFAEKSQLKLDWSTRQRICVGIARGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEGYTHITTRVAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTLNWPKDGCFSLVDLVHVLREEGDLMDLVDERLGNDFKREEVVVMINVALLCTQVSPMHRPTMASVVCMLEGKTDVKEVVLDTREVLDVKKLEMQQYYNMREKNKTLATPEESISMGETSAFMSDTDLYSVNMDSSS 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3765g00003 992 SMART serkin_6 655 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3765g00003 992 CDD STKc_IRAK 661 927 - -
Vium3765g00003 992 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 624 730 - -
Vium3765g00003 992 Gene3D Transferase(Phosphotransferase) domain 1 731 946 - -
Vium3765g00003 992 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 394 583 - -
Vium3765g00003 992 Gene3D Phosphorylase Kinase; domain 1 623 730 - -
Vium3765g00003 992 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 30 184 - -
Vium3765g00003 992 Pfam Protein tyrosine and serine/threonine kinase 658 923 IPR001245 GO:0004672|GO:0006468
Vium3765g00003 992 Gene3D - 395 583 - -
Vium3765g00003 992 Gene3D Ribonuclease Inhibitor 41 184 IPR032675 -
Vium3765g00003 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672|GO:0006468
Vium3765g00003 992 SUPERFAMILY L domain-like 73 351 - -
Vium3765g00003 992 Pfam Malectin domain 396 578 IPR021720 -
Vium3765g00003 992 SUPERFAMILY Protein kinase-like (PK-like) 639 926 IPR011009 -
Vium3765g00003 992 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 946 - -
Vium3765g00003 992 FunFam Putative LRR receptor-like serine/threonine-protein kinase 731 937 - -
Vium3765g00003 992 Gene3D Ribonuclease Inhibitor 185 257 IPR032675 -
Vium3765g00003 992 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 190 257 - -
Vium3765g00003 992 Pfam Leucine rich repeat 270 330 IPR001611 GO:0005515
Vium3765g00003 992 Gene3D Ribonuclease Inhibitor 258 384 IPR032675 -
Vium3765g00003 992 ProSiteProfiles Protein kinase domain profile. 655 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3765g00003 Vium-Chr3765 21803 55039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3765g00003 21 955 Receptor kinase-like Gene Family AT1G53420 54.968 0.0 1007
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3765g00003 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3765g00003 - - gmx:100786496 1707.58