Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3765g00002 ACTACTGAATATAGGGTCCTTGAATTCAATCAATTCACTGGAAATATTACATCGGATCTTGGAAACCTTTCTCACCTTGAAAGATTGCATCTTACTTCTAACAACTTCACTGGAGAACTTCCTGAAACTTTGGCTAAGCTTACATCATTGAGAGAGCTCCGTCTTAATGACAATAACTTCTCTGGAAGGATACCCAGTTTTATTCAAAGATGGACAAATCTTGAAATATTAGAAATTCAAGGCAGTGGTTTAAGTGGGCCAATTCCTTCTGAAATTTCATTTCTGCAAAACTTAAATGATTTGAGAATTACTGATTTGATTAATGGATCAGATTCCACTTTCCCACAAATTAATAATATGACAAAGTTGAAAACACTGATACTAAGGAATTGCCAAATTAATGACGAATTACCTCCATATCTTGGAAGCATGACAAACATTGACAATCATAATATGCAAACCTTAGACCTAAGCTTTAACAAATTAAGGGGAGAGATTCCAGAGACTTTTGAAAACCTATCAAAAGTGGGCAACGTATATTTCACTGGAAACCTACTTAGTGGGCCCCTACCAGCGTGGATAGCAGCAGTTAATTCTATAGATCTTTCATACAACAACTTCACCGATAAAAACTCCACCGTGGCATGCCAAGAGATTGCAGGAGTGAACTTGTTTGCAAGCTTCCCAATGAGCCAAAATGGACCTGTTACTTGTCTGACAACAGCAAACTGTACAAGATCCTTTGACTATTTCCATATAAATTGTGGTGGTGGACAAGAGACAAGCAGTGAGGGTATACTATATGATGATGACGTGGATTCATCAGGGGCAGCAAGATCAGGGGCAGCAACATCTATAAAGCTCAAAGAAAACTGGGCATTTAGCAATACCGGTCATTTCTTGGGTGGTAATAATAAAGAAGACTATATTCAGCAAAGTCAAAAGACGCTTTCTATGACTGATTCCGCATTGTATCAGACAGCACGTGTATCTCCCATTTCCTTGACTTATTACGGAATGTGTCTGGAAAATGGAGAGTACACAGTATCACTGCATTTTGCAGAGATCATGTTCACTGATGATAACACATATAGCAGTCTTGGAAGACGTATATTTGATGTTTACATTCAGGGAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGAAGCAGGAGGAGTTGGGAAGAACATCACAAAAAGAATTTCAACTACTGTTAGTAATAACTCTTTAGAGATTCGATTTTATTGGGCTGGAAAAGGAACAACTGCTATCCCATATAGATCAGTATATGGGCCTCTTATATCAGCTATATCTGTCACTCGTGTAAACAGTTCCAGAACAGATTCAGGTGGCATGGCTATAGGGGTTGCAATTGGGATAGCAGTTTCTGCAATAATATTAGTCATACTGGTTGTACTTGCCTGGAGACTTCATATTGGCAAAAGAAATTCATTAGCAAAAGAGTTAAAGCATTTGAATTTGCAAATGGGATTATTTCCTATGCGTAAAATCAAAGTTGCAACGAATAACTTTGATATTTCTAATAAAATCGGGGAAGGAGGCTTTGGTCCTGTCTACAAGGGTACTTTATCAGATGGCACAAGAATAGCAGTTAAGATGCTTTCATCAAAGTCTAAGCAAGGGAACCGTGAGTTTATAAATGAGATAGGGTTGATTTCAGCTTTGCAACACCCTTGTCTTGTTAAACTTTACGGTTGTTGTGTTGAGGAAGATCAGTTGTTGCTAATATACGAATATATGGAAAATAATAGCCTTGCACATGCTTTANTTTTTATATATTTACCTCCCATTGGTTTTTTCTTAGTTTCTGAATTGCACTTTACATGTATTTATAGAGATCTTTCATACAACAACTTCACCGATAAAAACTCCACCGTGGCATGCCAAGAGATTGCAGGAGTGAACTTGTTTGCAAGCTTCCCAATGAGCCAAAATGGACCTGTTACTTGTCTGACAACAGCAAACTGTACAAGATCCTTTGACTATTTCCATATAAATTGTGGTGGTGGACAAGAGACAAGCAGTGAGGGTATACTATATGATGATGACGTGGATTCATCAGGGGCAGCAAGATCAGGGGCAGCAACATCTATAAAGCTCAAAGAAAACTGGGCATTTAGCAATACCGGTCATTTCTTGGGTGGTAATAATAAAGAAGACTATATTCAGCAAAGTCAAAAGACGCTTTCTATGACTGATTCCGCATTGTATCAGACAGCACGTGTATCTCCCATTTCCTTGACTTATTACGGAATGTGTCTGGAAAATGGAGAGTACACAGTATCACTGCATTTTGCAGAGATCATGTTCACTGATGATAACACATATAGCAGTCTTGGAAGACGTATATTTGATGTTTACATTCAGGGAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGAAGCAGGAGGAGTTGGGAAGAACATCACAAAAAGAATTTCAACTACTGTTAGTAATAACTCTTTAGAGATTCGATTTTATTGGGCTGGAAAAGGAACAACTGCTATCCCATATAGATCAGTATATGGGCCTCTTATATCAGCTATATCTGTCACTCGTGTAAACAGTTCCAGAACAGATTCAGGTGGCATGGCTATAGGGGTTGCAATTGGGATAGCAGTTTCTGCAATAATATTAGTCATACTGGTTGTACTTGCCTGGAGACTTCATATTGGCAAAAGAAATTCATTAGCAAAAGAGTTAAAGCATTTGAATTTGCAAATGGGATTATTTCCTATGCGTAAAATCAAAGTTGCAACGAATAACTTTGATATTTCTAATAAAATCGGGGAAGGAGGCTTTGGTCCTGTCTACAAGGGTACTTTATCAGATGGCACAAGAATAGCAGTTAAGATGCTTTCATCAAAGTCTAAGCAAGGGAACCGTGAGTTTATAAATGAGATAGGGTTGATTTCAGCTTTGCAACACCCTTGTCTTGTTAAACTTTACGGTTGTTGTGTTGAGGAAGATCAGTTGTTGCTAATATACGAATATATGGAAAATAATAGCCTTGCACATGCTTTATTTAGAAATGAAGAATGTTGTATGCGATTGGATTGGGCAACCAGGTACAAGATTTGTGTTGGTATAGCTAGAGGTTTGGCTTTCCTACATGAAGAATCAAGATTAAAAGTTGTTCACAGAGACATAAAGGCTACTAATGTGTTGTTAGACAAAGATCTAAACCCTAAGATATCTGATTTTGGTCTTGCAAAGCTTGATGATGAGGATAATACCCACATAAGCACAAGAATAGCTGGGACTTATGGATATATGGCACCAGAATATGCTATGCATGGTTATTTAACTGATAAAGCAGATGTCTATAGTTTTGGAGTGGTTGCCTTGGAAATTGTAACTGGAAAGAATAATACCATCCCTCGACCCAAGCAAGAAGCATTGCATCTTTTAGATTGGGCACGTTTGTTGAAAGAGAAAGGGAATCTGATGGAGCTTATTGATGGAAGGTTAGGATCAAATTTCAATGAAAAAGAGGTTATGATGATGATAAAAGTGGGTCTTCTGTGCACAAATGCCACTGCAAACCTTAGACCTACCATGTCATCAGTACTTAGCATGCTTGAAGGAAAAGCTGTGATACCAGAATTTATTTTAGATTCATCTGAAATAATGGATGAAAAGAAGCAAGAGGTTATAAGACAATATTACTCTCAAATGGAAGAAACTGATAGCAGTGAAACCCATGGAAATAGTTCATCAAAAGATGGGCCATGGACTGCTTCGTCTTCATCAGCTGCAGATTTATATCCTCTTCATATTGATTCTTCTTATTGGGAGAAAAGAAATTAG 3837 0.3753 TTEYRVLEFNQFTGNITSDLGNLSHLERLHLTSNNFTGELPETLAKLTSLRELRLNDNNFSGRIPSFIQRWTNLEILEIQGSGLSGPIPSEISFLQNLNDLRITDLINGSDSTFPQINNMTKLKTLILRNCQINDELPPYLGSMTNIDNHNMQTLDLSFNKLRGEIPETFENLSKVGNVYFTGNLLSGPLPAWIAAVNSIDLSYNNFTDKNSTVACQEIAGVNLFASFPMSQNGPVTCLTTANCTRSFDYFHINCGGGQETSSEGILYDDDVDSSGAARSGAATSIKLKENWAFSNTGHFLGGNNKEDYIQQSQKTLSMTDSALYQTARVSPISLTYYGMCLENGEYTVSLHFAEIMFTDDNTYSSLGRRIFDVYIQGKLELKDFNIANEAGGVGKNITKRISTTVSNNSLEIRFYWAGKGTTAIPYRSVYGPLISAISVTRVNSSRTDSGGMAIGVAIGIAVSAIILVILVVLAWRLHIGKRNSLAKELKHLNLQMGLFPMRKIKVATNNFDISNKIGEGGFGPVYKGTLSDGTRIAVKMLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEEDQLLLIYEYMENNSLAHALXFIYLPPIGFFLVSELHFTCIYRDLSYNNFTDKNSTVACQEIAGVNLFASFPMSQNGPVTCLTTANCTRSFDYFHINCGGGQETSSEGILYDDDVDSSGAARSGAATSIKLKENWAFSNTGHFLGGNNKEDYIQQSQKTLSMTDSALYQTARVSPISLTYYGMCLENGEYTVSLHFAEIMFTDDNTYSSLGRRIFDVYIQGKLELKDFNIANEAGGVGKNITKRISTTVSNNSLEIRFYWAGKGTTAIPYRSVYGPLISAISVTRVNSSRTDSGGMAIGVAIGIAVSAIILVILVVLAWRLHIGKRNSLAKELKHLNLQMGLFPMRKIKVATNNFDISNKIGEGGFGPVYKGTLSDGTRIAVKMLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEEDQLLLIYEYMENNSLAHALFRNEECCMRLDWATRYKICVGIARGLAFLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVTGKNNTIPRPKQEALHLLDWARLLKEKGNLMELIDGRLGSNFNEKEVMMMIKVGLLCTNATANLRPTMSSVLSMLEGKAVIPEFILDSSEIMDEKKQEVIRQYYSQMEETDSSETHGNSSSKDGPWTASSSSAADLYPLHIDSSYWEKRN 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3765g00002 1278 Pfam Protein tyrosine and serine/threonine kinase 514 597 IPR001245 GO:0004672|GO:0006468
Vium3765g00002 1278 Pfam Protein tyrosine and serine/threonine kinase 934 1201 IPR001245 GO:0004672|GO:0006468
Vium3765g00002 1278 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 668 863 - -
Vium3765g00002 1278 Gene3D Ribonuclease Inhibitor 3 249 IPR032675 -
Vium3765g00002 1278 ProSiteProfiles Protein kinase domain profile. 512 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3765g00002 1278 Gene3D - 670 864 - -
Vium3765g00002 1278 Gene3D - 250 444 - -
Vium3765g00002 1278 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1008 1215 - -
Vium3765g00002 1278 ProSiteProfiles Protein kinase domain profile. 932 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3765g00002 1278 Gene3D Transferase(Phosphotransferase) domain 1 1008 1212 - -
Vium3765g00002 1278 MobiDBLite consensus disorder prediction 1231 1259 - -
Vium3765g00002 1278 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 481 587 - -
Vium3765g00002 1278 Gene3D Phosphorylase Kinase; domain 1 476 587 - -
Vium3765g00002 1278 Gene3D Phosphorylase Kinase; domain 1 896 1007 - -
Vium3765g00002 1278 SMART serkin_6 932 1203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3765g00002 1278 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 40 107 - -
Vium3765g00002 1278 SUPERFAMILY L domain-like 8 208 - -
Vium3765g00002 1278 Pfam Malectin domain 251 438 IPR021720 -
Vium3765g00002 1278 Pfam Malectin domain 671 858 IPR021720 -
Vium3765g00002 1278 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 621 1240 - -
Vium3765g00002 1278 SUPERFAMILY Protein kinase-like (PK-like) 492 604 IPR011009 -
Vium3765g00002 1278 Pfam Leucine Rich Repeat 152 173 IPR001611 GO:0005515
Vium3765g00002 1278 CDD STKc_IRAK 938 1205 - -
Vium3765g00002 1278 SUPERFAMILY Protein kinase-like (PK-like) 916 1224 IPR011009 -
Vium3765g00002 1278 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 901 1007 - -
Vium3765g00002 1278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1054 1066 IPR008271 GO:0004672|GO:0006468
Vium3765g00002 1278 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 248 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3765g00002 Vium-Chr3765 6206 16855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3765g00002 53 597 Receptor kinase-like Gene Family AT1G07650 48.932 1.75e-159 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3765g00002 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3765g00002 - - vum:124835551 2447.54