Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3765g00001 ATGAGCCAAAATGGACCTGTTACTTGTCTGACAACAGCAAACTGTACAAGATCCTTTGACTATTTCCATATAAATTGTGGTGGTGGACAAGAGACAAGCAGTGAGGGTATACTATATGATGATGACGTGGATTCATCAGGGGCAGCAAGATCAGGGGCAGCAACATCTATAAAGCTCAAAGAAAACTGGGCATTTAGCAATACCGGTCATTTCTTGGGTGGTAATAATAAAGAAGACTATATTCAGCAAAGTCAAAAGACGCTTTCTATGACTGATTCCGCATTGTATCAGACAGCACGTGTATCTCCCATTTCCTTGACTTATTACGGAATGTGTCTGGAAAATGGAGAGTACACAGTATCACTGCATTTTGCAGAGATCATGTTCACTGATGATAACACATATAGCAGTCTTGGAAGACGTATATTTGATGTTTACATTCAGGGAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGAAGCAGGAGGAGTTGGGAAGAACATCACAAAAAGAATTTCAACTACTGTTAGTAATAACTCTTTAGAGATTCGATTTTATTGGGCTGGAAAAGGAACAACTGCTATCCCATATAGATCAGTATATGGGCCTCTTATATCAGCTATATCTGTCACTCGTGTAAACAGTTCCAGAACAGATTCAGGTGGCATGGCTATAGGGGTTGCAATTGGGATAGCAGTTTCTGCAATAATATTAGTCATACTGGTTGTACTTGCCTGGAGACTTCATATTGGCAAAAGAAATTCATTAGCAAAAGAGTTAAAGCATTTGAATTTGCAAATGGGATTATTTCCTATGCGTAAAATCAAAGTTGCAACGAATAACTTTGATATTTCTAATAAAATCGGGGAAGGAGGCTTTGGTCCTGTCTACAAGGGTACTTTATCAGATGGCACAAGAATAGCAGTTAAGATGCTTTCATCAAAGTCTAAGCAAGGGAACCGTGAGTTTATAAATGAGATAGGGTTGATTTCAGCTTTGCAACACCCTTGTCTTGTTAAACTTTACGGTTGTTGTGTTGAGGAAGATCAGTTGTTGCTAATATACGAATATATGGAAAATAATAGCCTTGCACATGCTTTATTTAGAAATGAAGAATGTTGTATGCGATTGGATTGGGCAACCAGGTACAAGATTTGTGTTGGTATAGCTAGAGGTTTGGCTTTCCTACATGAAGAATCAAGATTAAAAGTTGTTCACAGAGACATAAAGGCTACTAATGTGTTGTTAGACAAAGATCTAAACCCTAAGATATCTGATTTTGGTCTTGCAAAGCTTGATGATGAGGATAATACCCACATAAGCACAAGAATAGCTGGGACTTATGGATATATGGCACCAGAATATGCAATGCATGGTTATTTAACTGATAAAGCAGATGTCTATAGTTTTGGAGTGGTTGCCTTGGAAATTGTAACTGGAAAGAATAATACCATCCCTCGACCCAAGCAAGAAGCATTGCATCTTTTAGATTGGGCACGTTTGTTGAAAGAGAAAGGGAATCTGATGGAGCTTATTGATGGAAGGTTAGGATCAAATTTCAATGAAAAAGAGGTTATGATGATGATAAAAGTGGGTCTTCTGTGCACAAATGCCACTGCAAACCTTAGACCTACCATGTCATCAGTACTTAGCATGCTTGAAGGAAAAGCTGTGATACCAGAATTTATTTTAGATTCATCTGAAATAATGGATGAAAAGAAGCAAGAGGTTATAAGACAATATTACTCTCAAATGGAAGAAACTGATAGCAGTGAAACCCATGGAAATAGTTCATCAAAAGATGGGCCATGGACTGCTTCGTCTTCATCAGCTGCAGATTTATATCCTCTTTCATATTGA 1863 0.3773 MSQNGPVTCLTTANCTRSFDYFHINCGGGQETSSEGILYDDDVDSSGAARSGAATSIKLKENWAFSNTGHFLGGNNKEDYIQQSQKTLSMTDSALYQTARVSPISLTYYGMCLENGEYTVSLHFAEIMFTDDNTYSSLGRRIFDVYIQGKLELKDFNIANEAGGVGKNITKRISTTVSNNSLEIRFYWAGKGTTAIPYRSVYGPLISAISVTRVNSSRTDSGGMAIGVAIGIAVSAIILVILVVLAWRLHIGKRNSLAKELKHLNLQMGLFPMRKIKVATNNFDISNKIGEGGFGPVYKGTLSDGTRIAVKMLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEEDQLLLIYEYMENNSLAHALFRNEECCMRLDWATRYKICVGIARGLAFLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVTGKNNTIPRPKQEALHLLDWARLLKEKGNLMELIDGRLGSNFNEKEVMMMIKVGLLCTNATANLRPTMSSVLSMLEGKAVIPEFILDSSEIMDEKKQEVIRQYYSQMEETDSSETHGNSSSKDGPWTASSSSAADLYPLSY 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3765g00001 620 MobiDBLite consensus disorder prediction 581 620 - -
Vium3765g00001 620 Pfam Protein tyrosine and serine/threonine kinase 285 552 IPR001245 GO:0004672|GO:0006468
Vium3765g00001 620 MobiDBLite consensus disorder prediction 582 620 - -
Vium3765g00001 620 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 252 358 - -
Vium3765g00001 620 CDD STKc_IRAK 289 556 - -
Vium3765g00001 620 FunFam Putative LRR receptor-like serine/threonine-protein kinase 359 566 - -
Vium3765g00001 620 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 19 214 - -
Vium3765g00001 620 Pfam Malectin domain 22 209 IPR021720 -
Vium3765g00001 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Vium3765g00001 620 Gene3D - 21 215 - -
Vium3765g00001 620 SUPERFAMILY Protein kinase-like (PK-like) 267 576 IPR011009 -
Vium3765g00001 620 Gene3D Transferase(Phosphotransferase) domain 1 359 564 - -
Vium3765g00001 620 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 25 591 - -
Vium3765g00001 620 ProSiteProfiles Protein kinase domain profile. 283 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3765g00001 620 Gene3D Phosphorylase Kinase; domain 1 247 358 - -
Vium3765g00001 620 SMART serkin_6 283 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3765g00001 Vium-Chr3765 103 5708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3765g00001 2 614 Receptor kinase-like Gene Family AT1G07650 53.760 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3765g00001 PK_Tyr_Ser-Thr 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3765g00001 - - vum:124835551 1181.78