Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3759g00001 ATGAATAACATGGTTTGTGCTGAAACTGAGAGTGTCTCAGCAGAGAAGAAGAGAGAGATAATGGAAGAAATTAGTAAGGGTAAAAAAGCAGCTATTGAGCTAAAGATTCTGCTTCAGAAACCCTCTGGGAGTGAACCCTTTCTCTCTTATCACCAACTCCTGGCCAGTGTCCTCACATCTTTCACACAATCTCTTTCTATTATTTGCTCTTCTTCTTCACAACCCAGTTCAGCAGATGGGCTGCCTCATCGGAATCTTCTGAATCCTACCGAATATAGCTCGCCGGTGACCGCTTCCGGCAATGATCCGACGTCTGGACATTGCAGTGAGAAGAGATCCCAAAAGGGTGGGAGAGGTCGCTACAATAGATGCAAGGGTGCACCGAGAAAGATCGTACTGTCTTGCACCACTGATGATAAGTATGCATGGAGGAAGTATGGACAAAAAGGAATCCTGAATTATGAATTTCCAAGGAGTTACTTCAGGTGCAGTCACAAGCATGATCAAGGTTGTAAAGCGACCAGACAGGTGCAACTGGAACAAGACAATCCACGTACGTATCGAATTACGTACATCGGTCTTCACACATGCTATGACATTCCTAAAGTTACACACAAAACCACAGATTTTTCCACTGGAGAATCACATCTTCTGCATTCTGATCGTAGCTCCAATGTAAAGGATGATCTCATTAGCTCACCAAACTTAGCTATAAAACCAGTTTTTCCCAAAGAAACTTACACATCAAGTGATCTTACTGATCACAAGTTATTAGATTCTAGCATGTGGTTAGAATATTGGAAGGAATCTGAACCATTCAACTCTACCATTATGCCCTCAAGGAAGGAATTTGATAACAGTGCAGATAATGCATATTCATGTGCAGACATTCAAAATCTGGACATGGATTTTGGTGGGCTGGCATCTGTTCTTTCCGACACTCACTTTCACTTTGATGCAGATCAGTTCTTTTAG 975 0.4226 MNNMVCAETESVSAEKKREIMEEISKGKKAAIELKILLQKPSGSEPFLSYHQLLASVLTSFTQSLSIICSSSSQPSSADGLPHRNLLNPTEYSSPVTASGNDPTSGHCSEKRSQKGGRGRYNRCKGAPRKIVLSCTTDDKYAWRKYGQKGILNYEFPRSYFRCSHKHDQGCKATRQVQLEQDNPRTYRITYIGLHTCYDIPKVTHKTTDFSTGESHLLHSDRSSNVKDDLISSPNLAIKPVFPKETYTSSDLTDHKLLDSSMWLEYWKESEPFNSTIMPSRKEFDNSADNAYSCADIQNLDMDFGGLASVLSDTHFHFDADQFF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3759g00001 324 Gene3D WRKY domain 127 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3759g00001 324 SMART WRKY_cls 137 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3759g00001 324 ProSiteProfiles WRKY domain profile. 138 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3759g00001 324 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 215 IPR044810 GO:0003700
Vium3759g00001 324 MobiDBLite consensus disorder prediction 73 107 - -
Vium3759g00001 324 MobiDBLite consensus disorder prediction 73 122 - -
Vium3759g00001 324 SUPERFAMILY WRKY DNA-binding domain 135 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3759g00001 324 Pfam WRKY DNA -binding domain 138 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3759g00001 Vium-Chr3759 4736 6446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3759g00001 17 210 WRKY Transcription Factor Family AT2G40750 35.023 2.84e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium3759g00001 WRKY 3.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3759g00001 - - gmx:100796071 296.204