Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3758g00011 ATGTCTTCTGCCGGCGGCGACGGTACCTCCGGCGAGCCTCGCCAATACTTCTGTCACCAGTGCAATCGCACCGTTTCTGTTACCCCTTCCCCGTCCTCTGATCTTCTCTGCCCCAATTGCAACGGCGGCTTCCTCGAAGAACTCGAAATCCCTAACCCTAACCCTATCCCTATCCCGTCCAATCCTTTCTTCCCCGACTTCCCCCTCGCTGGGACCACCGCCATTCCTCTCATCTTCCCTGGAGGAGCTGGCCAGCCCTTCGACGATTTCTCCACCCTCTCCGGCACTCGATCTGACGCCGCCACCGCCGATACTGCCCTCGCCCCCTTTGTCCTCCTCCAGAACTACTTGCAAACCCTAAGAGCCGCTGGCGGCGGTGGAAACCTTCAACTGGTGATTGAGTCCGGCGACCCCGGCGGAGCGTTTCGGTTTCCTGGCATCACCCACGGTGACTACTTCTTCGGGACGGGCCTTGAGGAGCTGATCCAGCACCTTGCCGAGAACGATCCGAACCGCTATGGTACCCCACCGGCTTCTAAGAAGGCGGTGGAGGGGCTGCCGGACGTCTCGGTCACCGACGAGCTGCTTGCGTCGGATTCCTCGCAATGTGCAGTGTGCAAAGACACGTTCGAACTCGGTGAAACCGCGAAGCAGATGCCCTGTAAGCATATATATCACGCGGACTGCATTTTACCTTGGTTAGAATTGCATAATTCCTGTCCCGTTTGTCGGTATGAGCTGCCCACAGATGATCCTGATTACGAGCAGAGGGCTCATCGTGGTAGCGGTGGCGGTAGTGGAGGCGGTAGTGGTGGTACCGGCAGTGGGGTGGCTCCCCAGGTGAATTGGAACCTGGCTGTGGGGCCTGGTGGTTCTGCGGATACATCTGGTGGAGGAGACAATTCCCAGCGGAGGAGGTTTAGGGTGGCTTTGCCGTGGCCCTTCAGGCAATCTGTTTCTTCTGGTGCTGAGACAAGTAATGTTGGCGGTGCCAACAATGATGACAACAGTATAAATGGTGGGGAAACCAATAGTGGGCAATCAAATTCTGAAAACAGGGGAAATCGGAACTTTGAGTCGGAGACCAGACAGGAAGATCTAGATTGA 1107 0.5682 MSSAGGDGTSGEPRQYFCHQCNRTVSVTPSPSSDLLCPNCNGGFLEELEIPNPNPIPIPSNPFFPDFPLAGTTAIPLIFPGGAGQPFDDFSTLSGTRSDAATADTALAPFVLLQNYLQTLRAAGGGGNLQLVIESGDPGGAFRFPGITHGDYFFGTGLEELIQHLAENDPNRYGTPPASKKAVEGLPDVSVTDELLASDSSQCAVCKDTFELGETAKQMPCKHIYHADCILPWLELHNSCPVCRYELPTDDPDYEQRAHRGSGGGSGGGSGGTGSGVAPQVNWNLAVGPGGSADTSGGGDNSQRRRFRVALPWPFRQSVSSGAETSNVGGANNDDNSINGGETNSGQSNSENRGNRNFESETRQEDLD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3758g00011 368 SUPERFAMILY RING/U-box 186 251 - -
Vium3758g00011 368 SMART ring_2 203 243 IPR001841 -
Vium3758g00011 368 Pfam Ring finger domain 202 244 IPR001841 -
Vium3758g00011 368 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Vium3758g00011 368 MobiDBLite consensus disorder prediction 318 368 - -
Vium3758g00011 368 MobiDBLite consensus disorder prediction 254 303 - -
Vium3758g00011 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 250 IPR013083 -
Vium3758g00011 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 123 248 - -
Vium3758g00011 368 CDD RING-H2_RNF126-like 202 244 - -
Vium3758g00011 368 MobiDBLite consensus disorder prediction 318 355 - -
Vium3758g00011 368 FunFam E3 ubiquitin-protein ligase RING1-like 164 250 - -
Vium3758g00011 368 Pfam zinc-ribbon 15 48 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3758g00011 Vium-Chr3758 60812 70527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3758g00011 161 257 C3H Transcription Factor Family AT5G15820 53.608 1.57e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3758g00011 K11982 - gmx:100818686 543.888