Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3747g00007 ATGGCCGCCACAGCAACTGCCTCTTCAATGGGTCCGCGGTATGCACCACCAGATCCGACACTCCCTAAACCATGGAAGGGTCTTGTGGATGGCAAGACCGGGTATCTTTACTTTTGGAATCCCGAGACCAATGTCACCCAGTATGAGAGGCCATCGAGCTCAGCTGCCCCACCAAAGTCCTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACATACGTCTCAAGGGTCGCAACGTGGTCGTAGTCCTGATTTCAGTGATAGGTATGATAGAAATGGCAGTGGTGGGTCAAATGATGCTTCACGGAATAATCAGAGTTCCAAAGGTGGAAGTTACAGTTCTCATAGTGTGCCAACTGGAACAAATGCTGCTGCCAATGTTAGTTATTCTGTCAAAGGTCATGGGGCATCGGATGCTGCAGCTGTGCTATCTCCTGAGTCTTATCGAAGTCGGCATGAAATAACTGTGACTGGAGACAATGTGCCACCGCCTCTTGCTTCATTTGGTTCTAGTGGCTTTCCACCGGAGGTGCTGAGAGAGGTACAAAATGCTGGTTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCAAAAACAGGCTCAGGGAAAACATTGGGATATTTAATTCCAGCATTTGTTCACCTCAAGCGCTGTGGTAATAACTCCAAAATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCGACACAAATACAAGATGAGGCTGTGAAGTTTGGGAAATCTTCAAGAATTTCTTGTGCATGTTTGTATGGAGGAGCACCCAAGGGTCCTCAACTCAGAGACATTGACCGGGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTCTCTTACCTGGTGCTAGATGAGGCAGACCGGATGCTGGATATGGGTTTCGAACCTCAAATTAGGAAAATTGTTAATGAGGTGCCTAATCGCAGGCAAACACTCATGTTTACTGCAACTTGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTACTGGTCAAACCTGTCCAGGTGAACATTGGCAATGTGGACGAGCTTGTTGCTAACAAGTCAATTACTCAGCATGTTGAAGTGTTGCCCCTGATGGAGAAACAGAGACGTCTGGAACATATTTTACGGTCACAGGATCAAGGATCAAAGATAATCATATTCTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTACTCTGACACGTCAGTTCGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGAGAGGGATCACGTGTTGAGTCAGTTTCGAACTGGGAGGTCACCTGTTCTTGTGGCTACAGATGTTGCTGCCCGGGGACTGGATATCAAGGACATTAGGGTGGTTGTCAATTACGACTTCCCCACAGGAGTTGAAGACTATGTTCATAGGATTGGAAGGACTGGAAGGGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCAAAATATGCTACCGATCTCATCAAAGTTTTGGAAGGTGCAAATCAGAAAGTACCTCCAGAACTTCGGGATATGTCATCGCGGGGTGGTAGTGGGATGGGAAGATCCAGACGATGGGGTTCTGGTGGAAGAGGTGGACGCAGTGATTCTGGATATGGTGGAAGGAATAATGACTCAGGATATGGTGGAAGGGGTGGTGATTCAAATTATGGAGCTAGGGGAAATGCTTCTTCTGGGAGAGGAGGCCGTGGTTTTGACTATGATTCTCAGAGGAATGATCGGGGTCTGAGTCCAGACAAGGGATCTAAATGGAGTGATCGCTACAAAAGCGTCAACCGTGAACGTAGTCGTAGCCCTGACAGGGCTGCACTACCTCAACATTCCCAAAGCAGCAGTTTTCACAAGGCAATGATGGAACGTGGTGGATGGGGTGATAGTGAACGCAATAAGAGCTCTAACAGAGATAGAAGCCGCAGTCCTAGCCCCTACAGACAGGAAAGGACCACAGCAGTTCGTGAACGATCCCCAGTTCACAGTTTTCATCGATCGATGATGGGACAAAGTCAATCATCCCCACCACGGCAGCGTGCACGCAGTCCTTATCGAAACTCATCACCCTCCCAGGGCGGTGGTAGGTCTTATAATAGTCCTCCAAAAGAGTGGGGAGGCAATGGAGGAGAGGTGGAGGAAGGGATGATTCCAGAGGAAGATGGAATGATAGGTCAAGGTGGGGATTAG 2292 0.4834 MAATATASSMGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVPSSSVQVQHTSQGSQRGRSPDFSDRYDRNGSGGSNDASRNNQSSKGGSYSSHSVPTGTNAAANVSYSVKGHGASDAAAVLSPESYRSRHEITVTGDNVPPPLASFGSSGFPPEVLREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFVHLKRCGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPLMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARTLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYATDLIKVLEGANQKVPPELRDMSSRGGSGMGRSRRWGSGGRGGRSDSGYGGRNNDSGYGGRGGDSNYGARGNASSGRGGRGFDYDSQRNDRGLSPDKGSKWSDRYKSVNRERSRSPDRAALPQHSQSSSFHKAMMERGGWGDSERNKSSNRDRSRSPSPYRQERTTAVRERSPVHSFHRSMMGQSQSSPPRQRARSPYRNSSPSQGGGRSYNSPPKEWGGNGGEVEEGMIPEEDGMIGQGGD 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3747g00007 763 Gene3D - 17 64 - -
Vium3747g00007 763 SMART ww_5 20 53 IPR001202 GO:0005515
Vium3747g00007 763 Gene3D - 376 547 IPR027417 -
Vium3747g00007 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 522 IPR027417 -
Vium3747g00007 763 Pfam DEAD/DEAH box helicase 190 360 IPR011545 GO:0003676|GO:0005524
Vium3747g00007 763 Pfam Helicase conserved C-terminal domain 397 505 IPR001650 -
Vium3747g00007 763 SMART ultradead3 185 388 IPR014001 -
Vium3747g00007 763 FunFam ATP-dependent RNA helicase RhlB 375 547 - -
Vium3747g00007 763 MobiDBLite consensus disorder prediction 536 763 - -
Vium3747g00007 763 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 317 325 IPR000629 -
Vium3747g00007 763 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 166 194 IPR014014 GO:0003724
Vium3747g00007 763 Pfam WW domain 21 51 IPR001202 GO:0005515
Vium3747g00007 763 SUPERFAMILY WW domain 12 52 IPR036020 GO:0005515
Vium3747g00007 763 MobiDBLite consensus disorder prediction 91 119 - -
Vium3747g00007 763 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 544 IPR001650 -
Vium3747g00007 763 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 115 544 - -
Vium3747g00007 763 SMART helicmild6 425 505 IPR001650 -
Vium3747g00007 763 MobiDBLite consensus disorder prediction 47 82 - -
Vium3747g00007 763 MobiDBLite consensus disorder prediction 1 27 - -
Vium3747g00007 763 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 371 IPR014001 -
Vium3747g00007 763 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Vium3747g00007 763 FunFam probable ATP-dependent RNA helicase DDX17 137 374 - -
Vium3747g00007 763 MobiDBLite consensus disorder prediction 604 639 - -
Vium3747g00007 763 CDD SF2_C_DEAD 385 514 - -
Vium3747g00007 763 Gene3D - 142 375 IPR027417 -
Vium3747g00007 763 CDD WW 22 50 IPR001202 GO:0005515
Vium3747g00007 763 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Vium3747g00007 763 MobiDBLite consensus disorder prediction 47 119 - -
Vium3747g00007 763 MobiDBLite consensus disorder prediction 658 697 - -
Vium3747g00007 763 MobiDBLite consensus disorder prediction 699 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3747g00007 Vium-Chr3747 25618 31189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3747g00007 164 543 Eukaryotic Initiation Factors Gene Family AT3G19760 33.247 1.20e-65 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3747g00007 K12823 - gmx:100816455 1161.36