Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3747g00002 ATGTTAACACCTTCTTTAGGGTCTTCCATAGGAGGTTTTGCCAATGTTTCCCATCACCACCCTATGATGTTGCCACCACCAAACAACAACAATGCTTTGCATGGCCAACATGAAGGCAAAGTCATATGGGATTTCTCTCAAAAAACCATGATTCATCCATCTTATGCTTCTTCTTCTTCCAACTCACCTTCACCTCTTTCTTTTCCTAATATTACCCAATACAAATGGAAAAGTAATCAAAAGATAAAGATGAAAAAAGATACTAATGATCTCATAATCAAAGGGTGGTGGACTCCTGAAGAAGACAGTAGTCTTGTGGAATTGGTGAATGAATTTGGGTTGAAGAAATGGACCCAAATTGCAAAATTTCTACCCGGAAGGATTGGGAAGCAATGTCGAGAAAGATGGTACAACCATCTTCAGCCAAACATTAAGAAGGAATCATGGACCCTGGAAGAAGACATGATTCTGATGAAAGTTCACCAAGAAATTGGAAACAAATGGTCTGAAATTGCAAAAAGATTACCTGGGAGAACTGAGAACAACATAAAAAACCATTGGAATGGTATCAAGCGTCGGCAAGACTATAAAAGGAACAACAACAAGAACAATGACAACCCTAATAATTACGATGAATCAATGCTCCATGCATACATCAAAAGGGTCACTGTTACTGAAGAAGCTGCAAGAGTTCAGAAGAAATCTGTCAGCAAGAATAATAAGAAGGATCAATGTTCATATAACATGCTTGATGGAAATACCAATTTAGCTAGGAATGTGGGTATATGA 789 0.379 MLTPSLGSSIGGFANVSHHHPMMLPPPNNNNALHGQHEGKVIWDFSQKTMIHPSYASSSSNSPSPLSFPNITQYKWKSNQKIKMKKDTNDLIIKGWWTPEEDSSLVELVNEFGLKKWTQIAKFLPGRIGKQCRERWYNHLQPNIKKESWTLEEDMILMKVHQEIGNKWSEIAKRLPGRTENNIKNHWNGIKRRQDYKRNNNKNNDNPNNYDESMLHAYIKRVTVTEEAARVQKKSVSKNNKKDQCSYNMLDGNTNLARNVGI 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3747g00002 262 Gene3D - 93 145 - -
Vium3747g00002 262 FunFam Transcriptional activator Myb isoform A 93 146 - -
Vium3747g00002 262 ProSiteProfiles Myb-like domain profile. 94 140 IPR001005 -
Vium3747g00002 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 195 IPR017930 -
Vium3747g00002 262 Pfam Myb-like DNA-binding domain 97 154 - -
Vium3747g00002 262 SMART sant 93 142 IPR001005 -
Vium3747g00002 262 SMART sant 145 193 IPR001005 -
Vium3747g00002 262 PANTHER MYB PROTEIN-RELATED 81 211 - -
Vium3747g00002 262 Gene3D - 147 210 - -
Vium3747g00002 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 144 IPR017930 -
Vium3747g00002 262 MobiDBLite consensus disorder prediction 182 212 - -
Vium3747g00002 262 ProSiteProfiles Myb-like domain profile. 141 191 IPR001005 -
Vium3747g00002 262 CDD SANT 148 191 IPR001005 -
Vium3747g00002 262 CDD SANT 97 140 IPR001005 -
Vium3747g00002 262 MobiDBLite consensus disorder prediction 182 200 - -
Vium3747g00002 262 SUPERFAMILY Homeodomain-like 93 187 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3747g00002 Vium-Chr3747 11773 14250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3747g00002 92 243 MYB Transcription Factor Family AT4G18770 54.777 3.55e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3747g00002 Myb_DNA-bind_6 6.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3747g00002 K09422 - ccaj:109801641 263.462