Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3747g00001 ATGAACAAGAACATGAACATGAACATGAACATGTCTGTTTGCAACCCTACCTCTATGATGGAGGCTCGTTCCAACCCTGTTACCACCCCTTTCTATGGAGGCTTTGCTAATGATCACTGTCACCATTCTGTGACGTTGGAACCAAACAAAACTGTCATGGATGCTTTGCATGGCAACCAAAAAAACACAGTCATATGTAAATTTTCACAGAAAACCATGTCGGCTCATCCATCTCAAGCTTCATGTTCCAAATCATCACCATTATCTTTTTCTCTCTTTAATAACTGTGAATTAGAGATGATGAGTGAATTTCACTGGGACAATAATCAAAATGCAAAGCTCAAAAATGATACCAACATTGCTAATCATAACATAATCAAAGGGCAATGGACTCCTGAAGAAGATAGAGCTCTTATGGAATTGAAAGGATCATGGAGCTTGGAGGAAGACATGATTTTGATCAAAGGGCACCAAGAATTTGGAAGAAAATGGTCAAAGATTGCAAAGAGATTGAGTGGTAGGACTGAGAATGACATCAAGAACCGGTGGAATGCAACCATCCGACGCCAAAACTGCAACAAGAACAGTAAAGCTCAGTACAAAGGCTCAATCCTCCATGCCTATGTTAAATGGGTCACTGCAACTGAACAAAAACTTCTCAGAAAACCCTCAGACAACAAGAATAAAAATGTCTTTGGATGCACTTGTGATGAGCTAGCTCTTTTCTTGAGCTAG 735 0.3986 MNKNMNMNMNMSVCNPTSMMEARSNPVTTPFYGGFANDHCHHSVTLEPNKTVMDALHGNQKNTVICKFSQKTMSAHPSQASCSKSSPLSFSLFNNCELEMMSEFHWDNNQNAKLKNDTNIANHNIIKGQWTPEEDRALMELKGSWSLEEDMILIKGHQEFGRKWSKIAKRLSGRTENDIKNRWNATIRRQNCNKNSKAQYKGSILHAYVKWVTATEQKLLRKPSDNKNKNVFGCTCDELALFLS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3747g00001 244 SMART sant 141 189 IPR001005 -
Vium3747g00001 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 191 IPR017930 -
Vium3747g00001 244 Pfam Myb-like DNA-binding domain 142 184 IPR001005 -
Vium3747g00001 244 PANTHER MYB PROTEIN-RELATED 142 199 - -
Vium3747g00001 244 SUPERFAMILY Homeodomain-like 142 192 IPR009057 -
Vium3747g00001 244 Gene3D - 144 205 - -
Vium3747g00001 244 ProSiteProfiles Myb-like domain profile. 142 187 IPR001005 -
Vium3747g00001 244 CDD SANT 144 184 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3747g00001 Vium-Chr3747 7011 8463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3747g00001 125 230 MYB Transcription Factor Family AT4G18770 35.762 2.74e-21 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium3747g00001 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3747g00001 - K09422 vra:111242362 291.582