Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3744g00006 ATGGTTGAACTTGGAGAAGGTGCTGATACTTTTAAATTGGAGTGTAGCTGCAAAGGTGAGCTTTCATTGGCACATAAAGAATGTGCAGTCAAATGGTTTACCATTAAAGGTAATAGAACATGTGATGTGTGCAAGCAAGAGGTTCAGAACCTACCTGTCACTCTTTTACGAGTTCAAAATGGTCAGACCCATAACATACTGGGGTCAGACGCTTCTCATTACAGGGTTTGGCAGGATGCTCCCGTTCTTGTTGTTATCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTGTCTAATATGGGATCCGGTTCTATTGCCATGTCTCTCCCATTTTCATGTATATTGGGTCTTCTTGCGAGCATGACAGCAACAACAATGGTGAGGAGAAATCATGTTTGGATTTATGCAACTGTTCAGTTTTGTCTGGTGGTTCTTTCTGGGCATCTTTTCTTTTCATTGATTCATATGCAAGCTGTTCTTGCTATCCTACTAGCTACACTTACTGGGTTTGGAGTTGTAATGTGTGGAGCTTCTATTCTTATGGAGATTTTAAAGTGGAGGAGGAGATCCCTTGCTCAGTCAAATCAACAGCAAGGTTCCCAAGATGCGGTGCCACCAGATCAATCATCTACAGTTGCACATCAACCTCAGACTGGTTCTGAACAAATTGAAAGCAATTTAGGAGAGTCTTCTCAACAGAGGAGTTGA 717 0.4184 MVELGEGADTFKLECSCKGELSLAHKECAVKWFTIKGNRTCDVCKQEVQNLPVTLLRVQNGQTHNILGSDASHYRVWQDAPVLVVINMLAYFCFLEQLLVSNMGSGSIAMSLPFSCILGLLASMTATTMVRRNHVWIYATVQFCLVVLSGHLFFSLIHMQAVLAILLATLTGFGVVMCGASILMEILKWRRRSLAQSNQQQGSQDAVPPDQSSTVAHQPQTGSEQIESNLGESSQQRS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3744g00006 238 SMART ringv_2 3 45 IPR011016 GO:0008270
Vium3744g00006 238 PANTHER OS02G0165000 PROTEIN 1 208 - -
Vium3744g00006 238 ProSiteProfiles Zinc finger RING-CH-type profile. 1 51 IPR011016 GO:0008270
Vium3744g00006 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 53 IPR013083 -
Vium3744g00006 238 MobiDBLite consensus disorder prediction 197 238 - -
Vium3744g00006 238 SUPERFAMILY RING/U-box 6 48 - -
Vium3744g00006 238 Pfam RING-variant domain 10 44 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3744g00006 Vium-Chr3744 54279 56411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3744g00006 7 51 C3H Transcription Factor Family AT2G37950 44.444 4.74e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3744g00006 - - vum:124835477 477.633