Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3744g00005 ATGGCAACTGAAGCTGCAGACTCTTCCAACCACAAAAATAACCAAGGCCATGGCACCACTGGAAGTAGAAGTGATACCCCAATTCAAAAGGGTCCAGCATCATCGGAAATAACAGAGGAATTCACAAGAGATCAACGTGGGACAAGGGAAAACCTTATCGTGGATATACCTGCAATATCTCATGAGGAACAAAAAGAAGATTATGTGAGGATAAACATGCCTCTAACTCCACCTCCAAGAAGAGTGATTTTTTCCCCTTGTCCAAGTCCTGTTTACCCAAGAAGCAAAGAATCCCCAGGTCCCTCCTCATCAAAAAGTAGATCAAATATTAAAGCCTTTCTTCCTAAACTCAGTTTTAAATTTCGCAACACAAGCTCGGAGATTGAAAAGGCTGCTTTCCTAGCACTTGGAGGATCAGCAACAGTGGCACCAAAAAGGCCTTTTCTATCAAGGACATTATCTCTTGTCACACCTAGAGGGAAGAAAACATCATCCTTACCTGTAACCCCAATTGCTCATTCAAATCCTGGGTCTGTACATGGCGGCAACATGGCTTATGCAGAAACAGTTGAGAATGAAATGAAATTACCAATTCATCGTTCTCGTTCAGTACCTATGCTAAACAAAGAAGGTAGCTCACCCGTACCTGGCATGTTTCGTATAGTTCCGACCACATTACGAGTGGATGATAAAATTTCCGCAACACCTATAACATCTCCACTTCATGATACTGTTCACAATGAGGATGGTGGTGAAGATATTCCGGAAGAAGAAGCTGTTTGTCGAATTTGTATGGTTGAACTTGGAGAAGGTGCTGATACTTTTAAATTGGAGTGTAGCTGCAAAGGTGAGCTTTCATTGGCACATAAAGAATGTGCAGTCAAATGGTTTACCATTAAAGGTAATAGAACATGTGATGTGTGCAAGCAAGAGGTTCAGAACCTACCTGTCACTCTTTTACGAGTTCAAAATGGTCAGACCCATAACATACTGGGGTCAGACGCTTCTCATTACAGGGTTTGGCAGGATGCTCCCGTTCTTGTTGTTATCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTGTCTAATATGGGATCCGGTTCTATTGCCATGTCTCTCCCATTTTCATGTATATTGGGTCTTCTTGCGAGCATGACAGCAACAACAATGGATTCATATGCAAGCTGTTCTTGCTATCCTACTAGCTACACTTACTGGGTTTGGAGTTGTAATGTGTGGAGCTTCTATTCTTATGGAGATTTTAAAGTGGAGGAGGAGATCCCTTGCTCAGTCAAATCAACAGCAAGGTTCCCAAGATGCGGTGCCACCAGATCAATCATCTACAGTTGCACATCAACCTCAGACTGGTTCTGA 1383 0.4252 MATEAADSSNHKNNQGHGTTGSRSDTPIQKGPASSEITEEFTRDQRGTRENLIVDIPAISHEEQKEDYVRINMPLTPPPRRVIFSPCPSPVYPRSKESPGPSSSKSRSNIKAFLPKLSFKFRNTSSEIEKAAFLALGGSATVAPKRPFLSRTLSLVTPRGKKTSSLPVTPIAHSNPGSVHGGNMAYAETVENEMKLPIHRSRSVPMLNKEGSSPVPGMFRIVPTTLRVDDKISATPITSPLHDTVHNEDGGEDIPEEEAVCRICMVELGEGADTFKLECSCKGELSLAHKECAVKWFTIKGNRTCDVCKQEVQNLPVTLLRVQNGQTHNILGSDASHYRVWQDAPVLVVINMLAYFCFLEQLLVSNMGSGSIAMSLPFSCILGLLASMTATTMDSYASCSCYPTSYTYWVWSCNVWSFYSYGDFKVEEEIPCSVKSTARFPRCGATRSIIYSCTSTSDWF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3744g00005 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 316 IPR013083 -
Vium3744g00005 460 MobiDBLite consensus disorder prediction 1 58 - -
Vium3744g00005 460 CDD RING_CH-C4HC3_MARCH 261 309 - -
Vium3744g00005 460 MobiDBLite consensus disorder prediction 1 36 - -
Vium3744g00005 460 SMART ringv_2 260 309 IPR011016 GO:0008270
Vium3744g00005 460 ProSiteProfiles Zinc finger RING-CH-type profile. 253 315 IPR011016 GO:0008270
Vium3744g00005 460 MobiDBLite consensus disorder prediction 80 108 - -
Vium3744g00005 460 SUPERFAMILY RING/U-box 257 312 - -
Vium3744g00005 460 MobiDBLite consensus disorder prediction 159 180 - -
Vium3744g00005 460 PANTHER OS02G0165000 PROTEIN 12 393 - -
Vium3744g00005 460 Pfam RING-variant domain 261 308 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3744g00005 Vium-Chr3744 40651 51968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3744g00005 258 315 C3H Transcription Factor Family AT2G37950 42.373 2.85e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3744g00005 - - gmx:100787963 665.996