Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3737g00001 ATGGGACGAATCAGCCTTCTGCTTGCAGATTTCGTTCTGTCTTTCATGTGGGTATGCTCCGGTGTTCTTGTTCGCTTCATCGTCTTCCAACATCTTGGCTTCGGTCACTCACCCCTCGGTGAGGTTATCAAAACCACCTTCTCCGTCGCCAGCATGTTCTTCTTCGCCTTCCTTGTCAAGATTACGCGTGGCGGCGCCTACAACCCCCTCACCGTTTTGGCTGATTCTATCTCTAGGGATTTTAACTACTTCCTCTACTGCGTTGGTGCTAGAATCCCCGCACAGGTGGTTGGAAGTATTATTGGCGTTAAATTTCTTATTGATACCATTCCTGAAGTGGGACAGGGACCACGTTTGAACGTTGACATTCATCAGGGTGCACTCACAGAAGGATTACTAACCTTTGCAATTGTAACCATTTCACTTGGACTTGCCACAAAAATTCGTGAAAATTTCTTCATGAAGACTTGGATTTCCAGCCTCTCTAAATTAACACTTCATATTCTTGGTTCTGACCTGACTGGTGGTTGTATGAACCCTGCATCAGTGATGGGATGGGCTTATGCTCGTGGGGATCACATAACAAAGGAGCACTTCTTTGTATACTGGCTTGCTCCCATAGAGGCAACTATTTTAGCAGTGTGGACATTCAAATTACTGGTGCCGCCTGCAAAAGAAGATAACGCAGCCTTAAAACGTAAATCTGATTGA 711 0.4557 MGRISLLLADFVLSFMWVCSGVLVRFIVFQHLGFGHSPLGEVIKTTFSVASMFFFAFLVKITRGGAYNPLTVLADSISRDFNYFLYCVGARIPAQVVGSIIGVKFLIDTIPEVGQGPRLNVDIHQGALTEGLLTFAIVTISLGLATKIRENFFMKTWISSLSKLTLHILGSDLTGGCMNPASVMGWAYARGDHITKEHFFVYWLAPIEATILAVWTFKLLVPPAKEDNAALKRKSD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3737g00001 236 Gene3D Glycerol uptake facilitator protein. 3 235 IPR023271 -
Vium3737g00001 236 PRINTS Major intrinsic protein family signature 160 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3737g00001 236 PRINTS Major intrinsic protein family signature 87 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3737g00001 236 PRINTS Major intrinsic protein family signature 200 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3737g00001 236 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3737g00001 236 PRINTS Major intrinsic protein family signature 129 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3737g00001 236 Pfam Major intrinsic protein 7 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3737g00001 236 SUPERFAMILY Aquaporin-like 6 232 IPR023271 -
Vium3737g00001 236 PANTHER AQUAPORIN SIP2-1-RELATED 1 236 IPR044226 GO:0015267
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3737g00001 Vium-Chr3737 230 2415 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3737g00001 1 236 Major Intrinsic Protein MIP AT3G56950 59.916 2.04e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3737g00001 K09875 - gmx:100786138 418.698