Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3733g00002 ATGCAGAGCTCTCAGCAATGGGTCGAGAAATACCGACCAAGGCAAGTGAAAGATGTTGCCTACCAAGAGGAAGTTGTTCGAGTTCTAACAAATACACTTGAAACTGGATGTTGCCCCCACATGCTCTTCTATGGTCCTCCCGGCACTGGAAAAACAACTACTGCCCTTGCAATTGCCCGTCAGCTTTTCGGGCCTGAGCTCTATAAGTCTAGGGTGCTGGAGCTGAATGCAAGTGATGATAGAGGGATTAATGTTGTTCGTACAAAGATAAAAGATTTTGCTGCTGTGGCTGTTGGTACTGTTAAGCGTAAGAATGGTTATCTTTGTCCACCATTCAAGATTATTGTTCTAGATGAGGCTGATTCAATGACAGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACGTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTGAGCAGGATTATAGAACCACTTGCTTCACGGTGTGCAAAATTCAGGTTCAAGCCATTGTCAGAAGAAATCATGAGCAGCCGGATATTGTACATATGCAAAGAAGAGGGCCTCTGTCTTGATGCTAAGGTGAGAACCTTATGGACTATTTAG 603 0.4345 MQSSQQWVEKYRPRQVKDVAYQEEVVRVLTNTLETGCCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTVKRKNGYLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYICKEEGLCLDAKVRTLWTI 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3733g00002 200 CDD AAA 22 162 - -
Vium3733g00002 200 Pfam ATPase family associated with various cellular activities (AAA) 41 168 IPR003959 GO:0005524|GO:0016887
Vium3733g00002 200 FunFam Replication factor C subunit 5 1 170 - -
Vium3733g00002 200 SMART AAA_5 37 186 IPR003593 GO:0016887
Vium3733g00002 200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 195 IPR027417 -
Vium3733g00002 200 Gene3D - 1 169 IPR027417 -
Vium3733g00002 200 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3733g00002 Vium-Chr3733 24908 27283 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3733g00002 1 200 Core DNA Replication Machinery Family AT1G21690 82.090 3.43e-120 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3733g00002 K10755 - gmx:100798331 359.762