Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3733g00001 ATGCAGAGCTCTCAGCAATGGGTCGAGAAATACCGACCAAGGCAAGTGAAAGATGTTGCCTACCAAGAGGAAGTTGTTCGAGTTCTAACAAATACACTTGAAACTGGATGTTGCCCCCACATGCTCTTCTATGGTCCTCCCGGCACTGGAAAAACAACTACTGCCCTTGCAATTGCCCGTCAGCTTTTCGGGCCTGAGCTCTATAAGTCTAGGGTGCTGGAGCTGAATGCAAGTGATGATAGAGGGATTAATGTTGTTCGTACAAAGATAAAAGATTTTGCTGCTGTGGCTGTTGGTACTGTTAAGCGTAAGAATGGTTATCTTTGTCCACCATTCAAGATTATTGTTCTAGATGAGGCTGATTCAATGACAGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACGTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTGAGCAGGATTATAGAACCACTTGCTTCACGGTGTGCAAAATTCAGGTTCAAGCCATTGTCAGAAGAAATCATGAGCAGCCGGATATTGTACATATGCAAAGAAGAGGGCCTCTGTCTTGATGCTAAGGCTCTTTCAACCCTTAGTTCTATTTCTCATGGAGATCTTCGCCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCTGGGGTTGTTCCAGAAAAAGTTGTGGAGGCAGTTCTTCAAGCTTGCAGAAGTGGTAATTTTGATTTCGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAAATGCTTACTCAGTTATTTGAAGCCATTGTTGAAGAAAATGATCTGTCAGATGAACAGAAAGCAAGAATATCCAAGAAGCTGGGTGAAGCTGATAAGTGTCTAGTTGATGGTGCTGATGAATACTTGCAACTTCTTGATGTGGTCAGCAATACAATGAAGGCTTTTAGCAACATGCCAGAAGAATTTGCTTACGAGTGTTAG 1017 0.4238 MQSSQQWVEKYRPRQVKDVAYQEEVVRVLTNTLETGCCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTVKRKNGYLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYICKEEGLCLDAKALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPEKVVEAVLQACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNTMKAFSNMPEEFAYEC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3733g00001 338 Gene3D - 1 169 IPR027417 -
Vium3733g00001 338 Pfam ATPase family associated with various cellular activities (AAA) 41 168 IPR003959 GO:0005524|GO:0016887
Vium3733g00001 338 FunFam Replication factor C subunit 4 236 325 - -
Vium3733g00001 338 SMART AAA_5 37 186 IPR003593 GO:0016887
Vium3733g00001 338 Gene3D - 236 325 - -
Vium3733g00001 338 CDD HLD_clamp_RFC 170 229 - -
Vium3733g00001 338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 228 IPR027417 -
Vium3733g00001 338 Pfam Replication factor C C-terminal domain 236 321 IPR013748 -
Vium3733g00001 338 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 317 - -
Vium3733g00001 338 FunFam Replication factor C subunit 4 172 235 - -
Vium3733g00001 338 CDD AAA 22 162 - -
Vium3733g00001 338 SUPERFAMILY post-AAA+ oligomerization domain-like 236 321 IPR008921 GO:0003677|GO:0006260
Vium3733g00001 338 Gene3D - 172 235 - -
Vium3733g00001 338 FunFam Replication factor C subunit 5 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3733g00001 Vium-Chr3733 7588 14119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3733g00001 1 334 Core DNA Replication Machinery Family AT1G21690 76.119 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3733g00001 K10755 - gmx:100798331 617.076