Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3731g00001 ATGGGATCACCTCAAGGCTTCGGTGGAACCTCTTACAAGGAGACCAACCAGGTGTTTGCTCTCCAAAACGAACTCATCAGATTTTTAAATGCTGGAATTTTTGGCAATGATAAGGAATCTTGTCACACTTTACCTCAATCAACTACAAGAGCATCCATGTTGGTTAGGATCAACACCTTGCTTCAAGGATATTCAGGCATAAGATTTGAAATCATGGAGGCCATAGCCAAGTTTTTGAACCATAACATAACTCCCTGTCTCCCACTACGTGGCTCAATCACTGCATCAGGTGATATAATTCCTTTCTCATATGTTGTTAGTCTCTTGATTGGTAGGACAAACTCCAAGTCTAATGGACCTAATGGAGAAGTTCTTAATGCTAGAGAGGCCTTTCAATTAGCAGGAATTGATGGTGGTTTCTTTGAGTTGCAACCTAAAGAAGGATTAGCATTAGTAAATGGAACCACAGTTGGATCTGGCTTAGCTTCTATAGTTCTTTTTGAAGCAAACTTACTTGTCATCCTCTCAGAAGTCTTGGTTGCAATTTTTGTTGAAGTTATGCATGGAAAACCAGAATTCACAGATCACTTAATTCATAAATTGAAGCACCACCCTGGCCAAATCGAGGCTGCAGCCATAATGGAGCATATATTGGATGGAAGTTCATTTATTAAGGAAGCACAAAAGTTTAATGAAATTGACCCACTTCAAAAGCTTAAACAAGACAGGTATGCTCTCAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTAATCAGGCATGCAACAAAGATGATTGAAAGGGAGATAAACTCTGTAAATGATAACCCCTTGATTGACGCTTCAAGGAATAAGGCACTTCATTGTGGAAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACTCGTTTGGCCATAGCAACAATTGGAAAACTGTTGTTTGCCCAATTCACTGAACTTGTGAATGACTTATACAATAATGGTTTACCTTCAAGTTTAGCTGCTAGTCCCAACCCAAGCTTGGATTATGGCCTCAAAGGATCAGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTGGCAAATCCTGTCACAACTCATGTGCAGAGTACGGAGCAACATAACCAAGGGGTAAACTCGTTAGGCTTAATTTCTGCAAGAAAGACAGCGGAAGCATTAGACATCTTAAAGCTCATGGCTTCCACATTTTTAGTTGCATTATGTCAAGCAATTGATCTACGACATCTAGCGGAAAACTTGAAGAACACTGTGAAGAATATTGTGAGTGAAGTGGCAAAAAAAGTTCTCAAAATTGACATTAATCATGAGGACTTGCTTAAAATTGTTGATGGTGAGCATGTGTTTGCTTATATTGATGATCCTTGTAGGACAACACATCCTCTGATGCAAAAGTTGAGGTTAGTCCTAATTGATCATGCATTACAAAATGGTGACAAAGTGACAAGTTCAAGATCTTCAATCTTTCAAAAGATAAGTGCTTTTGAGGAAGAACTCAAAGTACTTTTGCCAAAGGAGGTGGAAAGTACTAGGATTGAAATTGAGAATGGAAATCCAGTTATTCCTAATCGAATTAGGAAATGTAGATCTTACTCAATGTATAAGTTTGTGAGAGACACTTTGGGCACAACTTTACTAACAGGCGAAAAAGTGACATCACCTGGTGAAGAATGCGATAAGGTATTTATTGCATTGTGTGAAGGAAAATTTATTGATCCTATGTTGAATTGTCTAAAAGAGTGGAATGGAACACCTTTACCAATATGA 1800 0.385 MGSPQGFGGTSYKETNQVFALQNELIRFLNAGIFGNDKESCHTLPQSTTRASMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGSITASGDIIPFSYVVSLLIGRTNSKSNGPNGEVLNAREAFQLAGIDGGFFELQPKEGLALVNGTTVGSGLASIVLFEANLLVILSEVLVAIFVEVMHGKPEFTDHLIHKLKHHPGQIEAAAIMEHILDGSSFIKEAQKFNEIDPLQKLKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDASRNKALHCGNFQGTPIGVSMDNTRLAIATIGKLLFAQFTELVNDLYNNGLPSSLAASPNPSLDYGLKGSEIAMASYCSELQYLANPVTTHVQSTEQHNQGVNSLGLISARKTAEALDILKLMASTFLVALCQAIDLRHLAENLKNTVKNIVSEVAKKVLKIDINHEDLLKIVDGEHVFAYIDDPCRTTHPLMQKLRLVLIDHALQNGDKVTSSRSSIFQKISAFEEELKVLLPKEVESTRIEIENGNPVIPNRIRKCRSYSMYKFVRDTLGTTLLTGEKVTSPGEECDKVFIALCEGKFIDPMLNCLKEWNGTPLPI 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3731g00001 599 Gene3D - 422 534 IPR023144 -
Vium3731g00001 599 Pfam Aromatic amino acid lyase 5 434 IPR001106 -
Vium3731g00001 599 NCBIfam phenylalanine ammonia-lyase 4 590 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vium3731g00001 599 PANTHER HISTIDINE AMMONIA-LYASE 5 599 IPR001106 -
Vium3731g00001 599 SUPERFAMILY L-aspartase-like 5 599 IPR008948 GO:0003824
Vium3731g00001 599 Gene3D - 2 155 IPR024083 -
Vium3731g00001 599 Gene3D Fumarase/aspartase (Central domain) 157 594 - -
Vium3731g00001 599 CDD PAL-HAL 6 419 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3731g00001 Vium-Chr3731 3199 7374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3731g00001 2 599 Monolignol Biosynthesis Gene Families AT3G53260 74.135 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3731g00001 K10775 - gmx:100801470 980.704