Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium372g00007 ATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACGTACAATGTGGATTCTGCACCACTATATTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGTGGGCACTGCACAAGCCTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAACAAGATGCTAACAAGACTTTGAACAGCCACAGTGCATCCCTGATGACCTATTCTGATTGTGAGGAAGAGGATCTCATTCCAATGAGTAATATTGTGAATAAACCTCCGGAGAAGAGACAGCGAACGCCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCTCACAAAGAAGCATTTAGTACTGCTGCAAAAAATTGGGCCAATTTTCCCCCAACTCAGTGCAAAGGAGATGATCAAGAGAGCTGTAGCCAGACAGATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCCTGATGCTGAGGTAAAAGCATAA 585 0.4274 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEQDANKTLNSHSASLMTYSDCEEEDLIPMSNIVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDDQESCSQTDQLVDLDSQVDPPDAEVKA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium372g00007 194 MobiDBLite consensus disorder prediction 158 194 - -
Vium372g00007 194 FunFam Axial regulator YABBY 4 108 175 - -
Vium372g00007 194 SUPERFAMILY HMG-box 109 162 IPR036910 -
Vium372g00007 194 Pfam YABBY protein 11 163 IPR006780 GO:0007275
Vium372g00007 194 Gene3D High mobility group box domain 108 169 IPR036910 -
Vium372g00007 194 CDD HMG-box_SF 120 163 - -
Vium372g00007 194 MobiDBLite consensus disorder prediction 158 181 - -
Vium372g00007 194 PANTHER PROTEIN YABBY 6-RELATED 2 172 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium372g00007 Vium-Chr372 50163 52322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium372g00007 2 172 C2C2-YABBY Transcription Factor Family AT1G23420 65.193 3.20e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vium372g00007 YABBY 5.6e-63 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium372g00007 K25796 - gmx:100804172 352.443