Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium372g00006 ATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACGTACAATGTGGATTCTGCACCACTATATTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGTGGGCACTGCACAAGCCTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAACAAGATGCTAACAAGACTTTGAACAGCCACAGTGCATCCCTGATGACCTATTCTGATTGTGAGGAAGAGGATCTCATTCCAATGAGTAATATTGTGAATAAACCTCCGGAGAAGAGACAGCGAACGCCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCTCACAAAGAAGCATTTAGTACTGCTGCAAAAAATGTAAGTGGGCCAATTTTCCCCCAACTCAGTGCAAAGGAGATGATCAAGAGAGCTGTAGCCAGACAGATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCCTGATGCTGAGGTAA 582 0.4296 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEQDANKTLNSHSASLMTYSDCEEEDLIPMSNIVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNVSGPIFPQLSAKEMIKRAVARQINLWILTPKWTLLMLR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium372g00006 193 Pfam YABBY protein 11 157 IPR006780 GO:0007275
Vium372g00006 193 CDD HMG-box_SF 120 154 - -
Vium372g00006 193 Gene3D High mobility group box domain 108 176 IPR036910 -
Vium372g00006 193 PANTHER PROTEIN YABBY 6-RELATED 2 171 IPR006780 GO:0007275
Vium372g00006 193 SUPERFAMILY HMG-box 109 152 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium372g00006 Vium-Chr372 50163 52325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium372g00006 2 155 C2C2-YABBY Transcription Factor Family AT1G23420 67.683 6.97e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vium372g00006 YABBY 1.5e-58 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium372g00006 K25796 - gmx:100804172 301.597