Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium372g00004 ATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACGTACAATGTGGATTCTGCACCACTATATTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGTGGGCACTGCACAAGCCTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAACAAGATGCTAACAAGACTTTGAACAGCCACAGTGCATCCCTGATGACCTATTCTGATTGTGAGGAAGAGGATCTCATTCCAATGAGTAATATTGTGAATAAACCTCCGGAGAAGAGACAGCGAACGCCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCTCACAAAGAAGCATTTAGTACTGCTGCAAAAAATTGGGCCAATTTTCCCCCAACTCAGTGCAAAGGAGATGATCAAGAGAGCTGTAGCCAGACAGATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCCTGATGCTGAGGTGAACGAAGAAGATGGTCAAGGTTTCCGTGGAAGAAAGGTCCAAAGGAACTCCATCTTTGAAAGGACACCATTTGAGTGA 654 0.4327 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEQDANKTLNSHSASLMTYSDCEEEDLIPMSNIVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDDQESCSQTDQLVDLDSQVDPPDAEVNEEDGQGFRGRKVQRNSIFERTPFE 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium372g00004 217 MobiDBLite consensus disorder prediction 160 217 - -
Vium372g00004 217 PANTHER PROTEIN YABBY 6-RELATED 2 173 IPR006780 GO:0007275
Vium372g00004 217 MobiDBLite consensus disorder prediction 194 210 - -
Vium372g00004 217 MobiDBLite consensus disorder prediction 160 181 - -
Vium372g00004 217 FunFam Axial regulator YABBY 4 108 175 - -
Vium372g00004 217 Gene3D High mobility group box domain 108 169 IPR036910 -
Vium372g00004 217 CDD HMG-box_SF 120 163 - -
Vium372g00004 217 Pfam YABBY protein 11 163 IPR006780 GO:0007275
Vium372g00004 217 SUPERFAMILY HMG-box 109 162 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium372g00004 Vium-Chr372 46612 49302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium372g00004 2 217 C2C2-YABBY Transcription Factor Family AT1G23420 60.088 3.50e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vium372g00004 YABBY 8.2e-63 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium372g00004 K25796 - gmx:100806755 389.423