Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3729g00001 ATGGCAGAAACTAACTCTGAATCTCCTACACCTTCGTCCTTTGGCCCCATGAGAAGCATACCATGTGATGACCAAGTTGGTGGGTTTGATTGGATGGTCCTTGTGGCAGCCATTCTATGTGCCTTGGTGTGTGCTCTTGGCCTCAACACGATGCTGCAATGTGTATTCCAATGTGCTTCTCGTGTTCTGACGCAACCTCGCCAATGGATGGCTTCTCGCAGGCTGAATTCTGGTCTGAAGAGGAAGGAAATGGTGGGTTTGCCAACCTCAACCTTCACAAACTCTCCCTCTCCATCTTCACCTTCTACCTGTGTCATTTGCTTGGCTGAGTTCTCTGATGGAGACCCTATAAGGTTCCTCCCAAACTGCAAACACTTTTTCCATGTTCTTTGCATTGACAAGTGGCTCCTTTCTCACTCTTCTTGCCCTACTTGCAGACACCTACTCAACCCAAATCATCACCATCTTCACTCCTTACATACTGTCATAACAACTTAG 498 0.4739 MAETNSESPTPSSFGPMRSIPCDDQVGGFDWMVLVAAILCALVCALGLNTMLQCVFQCASRVLTQPRQWMASRRLNSGLKRKEMVGLPTSTFTNSPSPSSPSTCVICLAEFSDGDPIRFLPNCKHFFHVLCIDKWLLSHSSCPTCRHLLNPNHHHLHSLHTVITT 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3729g00001 165 SUPERFAMILY RING/U-box 103 152 - -
Vium3729g00001 165 CDD RING-H2_EL5-like 104 146 - -
Vium3729g00001 165 Pfam Ring finger domain 103 146 IPR001841 -
Vium3729g00001 165 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Vium3729g00001 165 PANTHER RING-H2 FINGER PROTEIN ATL78 22 152 IPR044602 GO:0016567|GO:0016740
Vium3729g00001 165 SMART ring_2 104 145 IPR001841 -
Vium3729g00001 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3729g00001 Vium-Chr3729 14900 15580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3729g00001 7 149 C3H Transcription Factor Family AT3G10910 37.086 3.98e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3729g00001 - K19040 gmx:100779286 211.46