Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3725g00024 ATGGGAACAAATCTCAGCACTCCCAAAACTGAAAAGTCTTCCGATGATGGAGAAAATGATCATCTTAGATATGGTTTATCATCAATGCAAGGCTGGCGTGCATCAATGGAAGATGCACATGCTGCACATCTTGATCTGGATGAATCCACTTCCTTTTTTGGAGTTTATGATGGTCATGGAGGTAAGGTGGTTGCCAAGTTTTGTGCTAAGTATCTTCACCAACAGGTGGTCAAGAGTGAAGCATACATAGCTGGAGATATAGGAACCTCTCTTCGGGAATCATTTTTCAGGATGGATGAGATGATGCGTGGTCAAAGGGGCTGGAGGGAATTGGCAAGTTTGGGTGATAAGATAAATAAGTTCAATGGTAAGATAGAAGGATTGATTTGGTCTCCACGAAGCAGAGAATATAAGGCTCAAGAGGATAGTTGGGCCTTTGAGGAGGGTCCTCATTCTAATTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAGTTATTAGAAACAACCAACTTTTTGTAGCAAATGCTGGTGATTCACGTTGTGTAATATGTAGGAAGGGTCAGGCTTACGATTTGTCTATAGATCATAAACCTGATCTTGATACTGAGAAGGAAAGAATCATAAAAGCTGGTGGTTTTATTCATGCAGGAAGAGTTAATGGGAGTTTAAGCCTTGCAAGAGCTATAGGTGACATGGAGTTTAAGCAGAATAGATTCCTTCCTGCTGAAAAACAAATGGTGACAGCCAATCCAGACATAAATACTATTGAACTTTCTGATGAAGATGAATTTATAGTGCTAGCTTGTGATGGCATATGGGATTGCTTGTCAAGCCAGCAATTGGTTGATTTCGTACGCCAACAACTTCTCATTGAAACAAAACTTTCTGCGGTTTGTGAAAGAGTGTTGGATCGATGTTTGGCACCAACAATAGCTATTGGTGATGGATGTGATAACATGACCATGATTTTAGTGCAGTTAAAAAAACCGAGCCAGTCCAGTGCACCAACATAA 1020 0.4098 MGTNLSTPKTEKSSDDGENDHLRYGLSSMQGWRASMEDAHAAHLDLDESTSFFGVYDGHGGKVVAKFCAKYLHQQVVKSEAYIAGDIGTSLRESFFRMDEMMRGQRGWRELASLGDKINKFNGKIEGLIWSPRSREYKAQEDSWAFEEGPHSNFAGPTSGSTACVAVIRNNQLFVANAGDSRCVICRKGQAYDLSIDHKPDLDTEKERIIKAGGFIHAGRVNGSLSLARAIGDMEFKQNRFLPAEKQMVTANPDINTIELSDEDEFIVLACDGIWDCLSSQQLVDFVRQQLLIETKLSAVCERVLDRCLAPTIAIGDGCDNMTMILVQLKKPSQSSAPT 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3725g00024 339 PANTHER PROTEIN PHOSPHATASE 2C 16 328 IPR015655 GO:0004722|GO:0006470
Vium3725g00024 339 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Vium3725g00024 339 Pfam Protein phosphatase 2C 141 311 IPR001932 -
Vium3725g00024 339 MobiDBLite consensus disorder prediction 1 20 - -
Vium3725g00024 339 CDD PP2Cc 23 329 IPR001932 -
Vium3725g00024 339 Gene3D - 1 330 IPR036457 -
Vium3725g00024 339 SMART PP2C_4 13 327 IPR001932 -
Vium3725g00024 339 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Vium3725g00024 339 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vium3725g00024 339 SUPERFAMILY PP2C-like 4 331 IPR036457 -
Vium3725g00024 339 SMART PP2C_SIG_2 28 329 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3725g00024 Vium-Chr3725 286822 292841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3725g00024 1 335 PP2C-type Phosphatase Gene Family AT2G25070 76.119 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3725g00024 K17499 - gmx:100793667 640.958