Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3725g00013 ATGCATTTCGCCTTGGTGGGGGGTTGTGTCTTTGATTACTGCTTTACCACGGATGTTATGGAAGAAGAAGAATATAGAGTGTATCTAGGAGGAATAATTGGGCAACTTCGTGGTCACTTCCCTGATGCTTCATTTATGGTGTTCAACATGAGGGAGGGAGACTGCCAAAGCCAGATTTCAAACATTTTGTGTGACTACGATATGACTGTGATAGACTATCCTCGACAGTATGAAGGGTGCCCATTGCTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAACTGGCTTGAACTTGGGCATCACAATGTTGTCTTGATGCATTGTGAACGAGGTGGGTGGCCGTTATTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAGATGTTTACAGGGGAGCAAAAAACACTAGACATGATATACAAGCAAGCTCCTCGGGAACTTCTGCAGTTGATGTCACCATTGAATCCTTTAGCTTCACAATTGAGATATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGGGCACTTACTTTGGACTGTGTAATTATAAGACTCATTCCTAACATGGGTGGAGAGGGTGGCTGCCGTCCTATATTTAGAATATACGGGCAAGACCCTTTTATTCCTGCAGATCGAACTCCCAAAGTTCTCTTCTCAACTCCAAAAAGGAGCAAACTTGTTCGCTACTGTAGGCAGACTGACTGTGAACTGGTTAAGATTGACATCCACTGTCATGTTCAAGGTGATGTCGTTTTTGAGTGTATTCATCTGCACAGTGATTTAGAGCATGAAGAAATGATGTTTCGGGTGATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATTGACATACTATGGAATGCTAAAGATTGCTTCCCTAAGAATTTTAGAGTGGAGGTTCTTTTCTCAGATATGGATGCTTCAACTTCTGTTATTTCAATTGATCTGCCTCGTGTTGAGGAGAAAGATGGCCTCCCTGTTGAAGCATTTGCGAAGGTCAAGGAGATTTTCAGCAATGTGGATTGGCTAGATTCAAAGGAAGAAGTAGCAAGTGTGCTCCAACAGATCACATCTTCAAATATCCTTCTGGAAAGATTAGACTCTGGGGTTTCTGCTGCAACAAGTGACTTGCAAAAGGAGTCATCTGAAAAGTCTACAGCTGTTTTGAAGGCATACAGTGATACAAACATTCAAACTTCTGCAGTTCAGGGGAAACATTCTATATCCTCATTAGGATCGTCTTTGGATTTAGCTATGGGAAATAAGACCGAACCATTAGAGTCAAAGACATTGTCCAAAAATGACATTGAGACTCTTGAATGTTCAGGTCAAGGGAACCAACCTATTCACTCATTTGGGCTCTCAAAAGATTCAGATTCTACTAAAAGGGGGACTGAGTCATTAGAATCCAAGGAGAAGGATATTGAGTCATTAGCATCCACTGATGCAGATTCATTGGCAAAGAAGACTGATTTGTTAGGATCAAAGGAGAAAACATTTGAGTCACTCAACTCCGAGGCATTTTTGGAAAATGATAGCAGATTCAAATATGAACCTAGGCCACTTGCAGAAGTTGATAACTCATCTGGTAGTGCTCCTATGGAAAAGAACAATGACCCTCTAGAATTAAAGGTATCACCAGAAAATACCCTCAAGACTTCTGCTTCCACGAGTCAGGGGAAACAGCTTACTCCCTCATTTGGACTCATAACAGATTCTAGTTCTCCTGAAAAGCCAGTTGAATCATTAGACAATGCCAAGGTTACAACATCTATGCCTCATGTGGAGAAGTCTATGCCTCATGTGGAGAAGTCTATGCCCTCAATTGAACCATATAAGGATGCATATTCAATGACACATGACATGGGACCATTAGAAACAAAGTCATTAACGGATGGAAATTCAATAAAAGAGAAAATGGGGCAATTAGAGCAAATGGTATTGTCAGAAAATGATACCAAGAGTGTCACATCCACAGCTCAGGGGAAACAATATAGTTCTTTACTTGAACAGCCCGTTGAAGCAAGCACAATTAAAACGAAAATTGAACCTCTTGAATTGCAGGTTTCCCTCCAGCTTCCCACTCAATCAAAAATAATTTCTTCACCGGTGCGTCCAGCTGTCCGATCTGCTTCTGCTTCCACTTCTTATTTTAACTCCTTAAAAGGTTCACCTGTAGCTATCTCAAGATATCGTAGTGCACCATCAGCTCTTGGAATAACATCTGTGTTGCAGGATCATGCAGCAGTGGATATCAAAGAAGTAACTCATCCAGTGACAGTATCTCCTCCAGCTTCTGTGTTGCCTCCTTCAGACTCCAAGGTGTTAAATTCTGTAGAGCCTAGTCCCACAGCTATTCCTCCAGCATCATCATCGCCTTTGCTTCCATCTTTACCTTTAAAAACTTCAGTTGATGCTCTTAAAACCACGGAAAAAACTTTTGAATCCCTTTCTCCTGCAGCTGTAACTACACCACCTCCACCACCTCCACCACCACCACCACCACCACCATCTTCTCAATGCGATCACACTTCAAATTTGATGCAATCTAATGCTACTCAGTACCCTGAGAATACAAATGAGGGTAAGAAACCATTGGTTGGTCCTCCTCCTCCTCCCCCATCCCCTTCAATGCTCGCTCCTCCAATCCCATCATTTTCTCCAGCCCCTTCCCTTCCTGAAACATCACTTTCCACAACCCAAGATTCATGTAAAGGTCCTCCTGCACCGCCACCTCCACCTGCGCTGTCTGGGTTTCCTTCTTCATTGGGTATAAATGAATCAGTTGCTATACCTGGCCCTCCTCCTCCTCCCCCGCCTCCACCTCCTAGCCTTTCAAGTTCTGCACCACCATTAGCACCACCACCACCACCACCCCCTCCTTCCGCTTCTGCATTCCAAAATTCTTTGTCTGAGAACTCCAAAAATGGTCCTCCTGTACCCCCACCTCCACCTCCTAGCCTTCCTGGTTCAACAATATCACCTTCAGCGCCACCACCACCTCCTCCTCCAGGTTCTGCGTCCCAAAATTCTTTGTCTAGCTCCACAAATGTTCCACCTGTACCCCCACCTCCCCTTTCTGCCAATGGATTGTCAAAACCTGGAGTTCCTGGACCACCTTCTGTTCCTGGACCACCTTCTGCTCCTGGACCACCTTCTGCTCCTTTTGGTGAAAAGGGTCGTGGCCTGATGCGAGCTAATGCAAAATTTCAGTCTAGGAGGAGCAATCTGAAACCTTACCATTGGCTAAAATTAACAAGGGCGATGCAAGGAAGCTTATGGGCTGAGACACAGAAACTAGATGAATTTTGTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAAACTTTGTTCTCCGCAGCTTCCCCAGCTGCTAATGATGGAAAAGGAGGAAAGTTAAATCGCCGTGCCTCTGGGCAAAAAGTTGAGAAAGTTCAACTGATTGAGCTCAGGCGGGCCTATAACTGTGAGATCATGCTTACAAAAGTCAAAATTCCTTTGCCTGACTTGATGAGTGCTGTGCTTGCAATGGATGATACAGTATTAGATATTGATCAACTTGATAACCTCATAAAATTCTCTCCAACCAAAGAAGAGATGGAAACACTCAAGAACTATGCCGGGAATAAGGACAACTTGGGAAAGTGTGAGCAGTTCTTCTTAGAATTGATGAAAGTTCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTCTTTTAAGATGCAATTCCTGTCCCAGGTTTCAGAGCTTAAAAGAGATTTGAATATTGTGAATTCTGCATCTGAAGAGATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACTATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTGCGGCTGTTGGGTTTCGATTGGATAGTCTCCTTAAACTGACTGATACACGATCAAGAAATAACAAGATGACTCTTATGCATTATCTCTGTAAGGTGCTTGCTGAAAAACTAGGAGAACTTCTCGATTTCCATAAAGACCTAGTGAGTTTGGAGGCGGCAAGCAAGATACAATTAAAATACTTGGCAGAGGAAATGCAAGCTATCAGTAAAGGACTAGAGAAAGTAGTTCAGGAATTGACTGCATCAGAGAATGATGGACCTGTGTCAGAATACTTCTGCCAGATTCTGAAGGAATTTCTTTCTTATGCTGAATCTGAAGTAAGGTCTTTGGCTCAACTTTATGCCAACGTGGGTAGAAATGCAGATGCATTGGCTTTATACTTTGGTGAAGATCCAGCACGTTGTCCATTTGAACAAGTTGTATCTACGCTGCTCAACTTTGTGAGGTTGTTCGTAAAAGCACATGAAGAAAATTGCAAGCAGATTGAACTAGAGAGAAAAAGAGCAGAGAAGGAAGCAGAGAATGAGAAGTTGAAGCTAGCTGCTGCCAAGAAGGAGTCTGAACAGATGATGAGGACCACTATAAAGAGTGGGGATATTAAATGA 4530 0.4278 MHFALVGGCVFDYCFTTDVMEEEEYRVYLGGIIGQLRGHFPDASFMVFNMREGDCQSQISNILCDYDMTVIDYPRQYEGCPLLTMEMIHHFLRSGENWLELGHHNVVLMHCERGGWPLLAFMLAALLIYRKMFTGEQKTLDMIYKQAPRELLQLMSPLNPLASQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPNMGGEGGCRPIFRIYGQDPFIPADRTPKVLFSTPKRSKLVRYCRQTDCELVKIDIHCHVQGDVVFECIHLHSDLEHEEMMFRVMFNTAFIRSNILMLNRDEIDILWNAKDCFPKNFRVEVLFSDMDASTSVISIDLPRVEEKDGLPVEAFAKVKEIFSNVDWLDSKEEVASVLQQITSSNILLERLDSGVSAATSDLQKESSEKSTAVLKAYSDTNIQTSAVQGKHSISSLGSSLDLAMGNKTEPLESKTLSKNDIETLECSGQGNQPIHSFGLSKDSDSTKRGTESLESKEKDIESLASTDADSLAKKTDLLGSKEKTFESLNSEAFLENDSRFKYEPRPLAEVDNSSGSAPMEKNNDPLELKVSPENTLKTSASTSQGKQLTPSFGLITDSSSPEKPVESLDNAKVTTSMPHVEKSMPHVEKSMPSIEPYKDAYSMTHDMGPLETKSLTDGNSIKEKMGQLEQMVLSENDTKSVTSTAQGKQYSSLLEQPVEASTIKTKIEPLELQVSLQLPTQSKIISSPVRPAVRSASASTSYFNSLKGSPVAISRYRSAPSALGITSVLQDHAAVDIKEVTHPVTVSPPASVLPPSDSKVLNSVEPSPTAIPPASSSPLLPSLPLKTSVDALKTTEKTFESLSPAAVTTPPPPPPPPPPPPPSSQCDHTSNLMQSNATQYPENTNEGKKPLVGPPPPPPSPSMLAPPIPSFSPAPSLPETSLSTTQDSCKGPPAPPPPPALSGFPSSLGINESVAIPGPPPPPPPPPPSLSSSAPPLAPPPPPPPPSASAFQNSLSENSKNGPPVPPPPPPSLPGSTISPSAPPPPPPPGSASQNSLSSSTNVPPVPPPPLSANGLSKPGVPGPPSVPGPPSAPGPPSAPFGEKGRGLMRANAKFQSRRSNLKPYHWLKLTRAMQGSLWAETQKLDEFCRAPEFDMSELETLFSAASPAANDGKGGKLNRRASGQKVEKVQLIELRRAYNCEIMLTKVKIPLPDLMSAVLAMDDTVLDIDQLDNLIKFSPTKEEMETLKNYAGNKDNLGKCEQFFLELMKVPRVESKLRVFSFKMQFLSQVSELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGAAVGFRLDSLLKLTDTRSRNNKMTLMHYLCKVLAEKLGELLDFHKDLVSLEAASKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSEYFCQILKEFLSYAESEVRSLAQLYANVGRNADALALYFGEDPARCPFEQVVSTLLNFVRLFVKAHEENCKQIELERKRAEKEAENEKLKLAAAKKESEQMMRTTIKSGDIK 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3725g00013 1509 PANTHER FORMIN-J 989 1496 - -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 1035 1071 - -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 789 803 - -
Vium3725g00013 1509 Pfam Formin Homology 2 Domain 1092 1459 IPR015425 -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 541 625 - -
Vium3725g00013 1509 ProSiteProfiles C2 tensin-type domain profile. 184 323 IPR014020 -
Vium3725g00013 1509 SMART PTEN_C2_2 182 322 IPR014020 -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 458 473 - -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 908 922 - -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 839 858 - -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 948 982 - -
Vium3725g00013 1509 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 59 172 IPR029021 -
Vium3725g00013 1509 Pfam C2 domain of PTEN tumour-suppressor protein 185 321 IPR014020 -
Vium3725g00013 1509 Coils Coil 1460 1501 - -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 778 815 - -
Vium3725g00013 1509 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 186 323 IPR035892 -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 833 1078 - -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 561 610 - -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 994 1025 - -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 474 497 - -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 883 907 - -
Vium3725g00013 1509 SMART it6_source 439 1507 IPR015425 -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 458 501 - -
Vium3725g00013 1509 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1085 1485 IPR015425 -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 1490 1509 - -
Vium3725g00013 1509 Gene3D - 181 326 - -
Vium3725g00013 1509 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1161 1485 - -
Vium3725g00013 1509 Gene3D Protein tyrosine phosphatase superfamily 9 176 IPR029021 -
Vium3725g00013 1509 MobiDBLite consensus disorder prediction 859 878 - -
Vium3725g00013 1509 Gene3D Formin, FH2 domain 1104 1500 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3725g00013 Vium-Chr3725 149127 165785 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3725g00013 1062 1487 FH2 protein (formin) Gene Family AT3G32400 71.897 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3725g00013 - - vum:124835422 2619.34