Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3725g00012 ATGGCATTGTTCCGCAAGTTCTTCTATAAGAAGCCCCCAGATGGGCTTCTAGAAATCACTGAAAGGGTTTATGTCTTTGATTACTGCTTTACCACGGATGTTATGGAAGAAGAAGAATATAGAGTGTATCTAGGAGGAATAATTGGGCAACTTCGTGGTCACTTCCCTGATGCTTCATTTATGGTGTTCAACATGAGGGAGGGAGACTGCCAAAGCCAGATTTCAAACATTTTGTGTGACTACGATATGACTGTGATAGACTATCCTCGACAGTATGAAGGGTGCCCATTGCTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAACTGGCTTGAACTTGGGCATCACAATGTTGTCTTGATGCATTGTGAACGAGGTGGGTGGCCGTTATTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAGATGTTTACAGGGGAGCAAAAAACACTAGACATGATATACAAGCAAGCTCCTCGGGAACTTCTGCAGTTGATGTCACCATTGAATCCTTTAGCTTCACAATTGAGATATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGGGCACTTACTTTGGACTGTGTAATTATAAGACTCATTCCTAACATGGGTGGAGAGGGTGGCTGCCGTCCTATATTTAGAATATACGGGCAAGACCCTTTTATTCCTGCAGATCGAACTCCCAAAGTTCTCTTCTCAACTCCAAAAAGGAGCAAACTTGTTCGCTACTGTAGGCAGACTGACTGTGAACTGGTTAAGATTGACATCCACTGTCATGTTCAAGGTGATGTCGTTTTTGAGTGTATTCATCTGCACAGTGATTTAGAGCATGAAGAAATGATGTTTCGGGTGATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATTGACATACTATGGAATGCTAAAGATTGCTTCCCTAAGAATTTTAGAGTGGAGGTTCTTTTCTCAGATATGGATGCTTCAACTTCTGTTATTTCAATTGATCTGCCTCGTGTTGAGGAGAAAGATGGCCTCCCTGTTGAAGCATTTGCGAAGGTCAAGGAGATTTTCAGCAATGTGGATTGGCTAGATTCAAAGGAAGAAGTAGCAAGTGTGCTCCAACAGATCACATCTTCAAATATCCTTCTGGAAAGATTAGACTCTGGGGTTTCTGCTGCAACAAGTGACTTGCAAAAGGAGTCATCTGAAAAGTCTACAGCTGTTTTGAAGGCATACAGTGATACAAACATTCAAACTTCTGCAGTTCAGGGGAAACATTCTATATCCTCATTAGGATCGTCTTTGGATTTAGCTATGGGAAATAAGACCGAACCATTAGAGTCAAAGACATTGTCCAAAAATGACATTGAGACTCTTGAATGTTCAGGTCAAGGGAACCAACCTATTCACTCATTTGGGCTCTCAAAAGATTCAGATTCTACTAAAAGGGGGACTGAGTCATTAGAATCCAAGGAGAAGGATATTGAGTCATTAGCATCCACTGATGCAGATTCATTGGCAAAGAAGACTGATTTGTTAGGATCAAAGGAGAAAACATTTGAGTCACTCAACTCCGAGGCATTTTTGGAAAATGATAGCAGATTCAAATATGAACCTAGGCCACTTGCAGAAGTTGATAACTCATCTGGTAGTGCTCCTATGGAAAAGAACAATGACCCTCTAGAATTAAAGGTATCACCAGAAAATACCCTCAAGACTTCTGCTTCCACGAGTCAGGGGAAACAGCTTACTCCCTCATTTGGACTCATAACAGATTCTAGTTCTCCTGAAAAGCCAGTTGAATCATTAGACAATGCCAAGGTTACAACATCTATGCCTCATGTGGAGAAGTCTATGCCTCATGTGGAGAAGTCTATGCCCTCAATTGAACCATATAAGGATGCATATTCAATGACACATGACATGGGACCATTAGAAACAAAGTCATTAACGGATGGAAATTCAATAAAAGAGAAAATGGGGCAATTAGAGCAAATGGTATTGTCAGAAAATGATACCAAGAGTGTCACATCCACAGCTCAGGGGAAACAATATAGTTCTTTACTTGAACAGCCCGTTGAAGCAAGCACAATTAAAACGAAAATTGAACCTCTTGAATTGCAGGTTTCCCTCCAGCTTCCCACTCAATCAAAAATAATTTCTTCACCGGTGCGTCCAGCTGTCCGATCTGCTTCTGCTTCCACTTCTTATTTTAACTCCTTAAAAGGTTCACCTGTAGCTATCTCAAGATATCGTAGTGCACCATCAGCTCTTGGAATAACATCTGTGTTGCAGGATCATGCAGCAGTGGATATCAAAGAAGTAACTCATCCAGTGACAGTATCTCCTCCAGCTTCTGTGTTGCCTCCTTCAGACTCCAAGGTGTTAAATTCTGTAGAGCCTAGTCCCACAGCTATTCCTCCAGCATCATCATCGCCTTTGCTTCCATCTTTACCTTTAAAAACTTCAGTTGATGCTCTTAAAACCACGGAAAAAACTTTTGAATCCCTTTCTCCTGCAGCTGTAACTACACCACCTCCACCACCTCCACCACCACCACCACCACCACCATCTTCTCAATGCGATCACACTTCAAATTTGATGCAATCTAATGCTACTCAGTACCCTGAGAATACAAATGAGGGTAAGAAACCATTGGTTGGTCCTCCTCCTCCTCCCCCATCCCCTTCAATGCTCGCTCCTCCAATCCCATCATTTTCTCCAGCCCCTTCCCTTCCTGAAACATCACTTTCCACAACCCAAGATTCATGTAAAGGTCCTCCTGCACCGCCACCTCCACCTGCGCTGTCTGGGTTTCCTTCTTCATTGGGTATAAATGAATCAGTTGCTATACCTGGCCCTCCTCCTCCTCCCCCGCCTCCACCTCCTAGCCTTTCAAGTTCTGCACCACCATTAGCACCACCACCACCACCACCCCCTCCTTCCGCTTCTGCATTCCAAAATTCTTTGTCTGAGAACTCCAAAAATGGTCCTCCTGTACCCCCACCTCCACCTCCTAGCCTTCCTGGTTCAACAATATCACCTTCAGCGCCACCACCACCTCCTCCTCCAGGTTCTGCGTCCCAAAATTCTTTGTCTAGCTCCACAAATGTTCCACCTGTACCCCCACCTCCCCTTTCTGCCAATGGATTGTCAAAACCTGGAGTTCCTGGACCACCTTCTGTTCCTGGACCACCTTCTGCTCCTGGACCACCTTCTGCTCCTTTTGGTGAAAAGGGTCGTGGCCTGATGCGAGCTAATGCAAAATTTCAGTCTAGGAGGAGCAATCTGAAACCTTACCATTGGCTAAAATTAACAAGGGCGATGCAAGGAAGCTTATGGGCTGAGACACAGAAACTAGATGAATTTTGTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAAACTTTGTTCTCCGCAGCTTCCCCAGCTGCTAATGATGGAAAAGGAGGAAAGTTAAATCGCCGTGCCTCTGGGCAAAAAGTTGAGAAAGTTCAACTGATTGAGCTCAGGCGGGCCTATAACTGTGAGATCATGCTTACAAAAGTCAAAATTCCTTTGCCTGACTTGATGAGTGCTGTGCTTGCAATGGATGATACAGTATTAGATATTGATCAACTTGATAACCTCATAAAATTCTCTCCAACCAAAGAAGAGATGGAAACACTCAAGAACTATGCCGGGAATAAGGACAACTTGGGAAAGTGTGAGCAGTTCTTCTTAGAATTGATGAAAGTTCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTCTTTTAAGATGCAATTCCTGTCCCAGGTTTCAGAGCTTAAAAGAGATTTGAATATTGTGAATTCTGCATCTGAAGAGATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACTATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTGCGGCTGTTGGGTTTCGATTGGATAGTCTCCTTAAACTGACTGATACACGATCAAGAAATAACAAGATGACTCTTATGCATTATCTCTGTAAGGTGCTTGCTGAAAAACTAGGAGAACTTCTCGATTTCCATAAAGACCTAGTGAGTTTGGAGGCGGCAAGCAAGATACAATTAAAATACTTGGCAGAGGAAATGCAAGCTATCAGTAAAGGACTAGAGAAAGTAGTTCAGGAATTGACTGCATCAGAGAATGATGGACCTGTGTCAGAATACTTCTGCCAGATTCTGAAGGAATTTCTTTCTTATGCTGAATCTGAAGTAAGGTCTTTGGCTCAACTTTATGCCAACGTGGGTAGAAATGCAGATGCATTGGCTTTATACTTTGGTGAAGATCCAGCACGTTGTCCATTTGAACAAGTTGTATCTACGCTGCTCAACTTTGTGAGGTTGTTCGTAAAAGCACATGAAGAAAATTGCAAGCAGATTGAACTAGAGAGAAAAAGAGCAGAGAAGGAAGCAGAGAATGAGAAGTTGAAGCTAGCTGCTGCCAAGAAGGAGTCTGAACAGATGATGAGGACCACTATAAAGAGTGGGGATATTAAATGA 4575 0.4271 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTDVMEEEEYRVYLGGIIGQLRGHFPDASFMVFNMREGDCQSQISNILCDYDMTVIDYPRQYEGCPLLTMEMIHHFLRSGENWLELGHHNVVLMHCERGGWPLLAFMLAALLIYRKMFTGEQKTLDMIYKQAPRELLQLMSPLNPLASQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPNMGGEGGCRPIFRIYGQDPFIPADRTPKVLFSTPKRSKLVRYCRQTDCELVKIDIHCHVQGDVVFECIHLHSDLEHEEMMFRVMFNTAFIRSNILMLNRDEIDILWNAKDCFPKNFRVEVLFSDMDASTSVISIDLPRVEEKDGLPVEAFAKVKEIFSNVDWLDSKEEVASVLQQITSSNILLERLDSGVSAATSDLQKESSEKSTAVLKAYSDTNIQTSAVQGKHSISSLGSSLDLAMGNKTEPLESKTLSKNDIETLECSGQGNQPIHSFGLSKDSDSTKRGTESLESKEKDIESLASTDADSLAKKTDLLGSKEKTFESLNSEAFLENDSRFKYEPRPLAEVDNSSGSAPMEKNNDPLELKVSPENTLKTSASTSQGKQLTPSFGLITDSSSPEKPVESLDNAKVTTSMPHVEKSMPHVEKSMPSIEPYKDAYSMTHDMGPLETKSLTDGNSIKEKMGQLEQMVLSENDTKSVTSTAQGKQYSSLLEQPVEASTIKTKIEPLELQVSLQLPTQSKIISSPVRPAVRSASASTSYFNSLKGSPVAISRYRSAPSALGITSVLQDHAAVDIKEVTHPVTVSPPASVLPPSDSKVLNSVEPSPTAIPPASSSPLLPSLPLKTSVDALKTTEKTFESLSPAAVTTPPPPPPPPPPPPPSSQCDHTSNLMQSNATQYPENTNEGKKPLVGPPPPPPSPSMLAPPIPSFSPAPSLPETSLSTTQDSCKGPPAPPPPPALSGFPSSLGINESVAIPGPPPPPPPPPPSLSSSAPPLAPPPPPPPPSASAFQNSLSENSKNGPPVPPPPPPSLPGSTISPSAPPPPPPPGSASQNSLSSSTNVPPVPPPPLSANGLSKPGVPGPPSVPGPPSAPGPPSAPFGEKGRGLMRANAKFQSRRSNLKPYHWLKLTRAMQGSLWAETQKLDEFCRAPEFDMSELETLFSAASPAANDGKGGKLNRRASGQKVEKVQLIELRRAYNCEIMLTKVKIPLPDLMSAVLAMDDTVLDIDQLDNLIKFSPTKEEMETLKNYAGNKDNLGKCEQFFLELMKVPRVESKLRVFSFKMQFLSQVSELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGAAVGFRLDSLLKLTDTRSRNNKMTLMHYLCKVLAEKLGELLDFHKDLVSLEAASKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSEYFCQILKEFLSYAESEVRSLAQLYANVGRNADALALYFGEDPARCPFEQVVSTLLNFVRLFVKAHEENCKQIELERKRAEKEAENEKLKLAAAKKESEQMMRTTIKSGDIK 1524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 874 893 - -
Vium3725g00012 1524 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1100 1500 IPR015425 -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 1505 1524 - -
Vium3725g00012 1524 Gene3D Formin, FH2 domain 1119 1515 IPR042201 -
Vium3725g00012 1524 Pfam Formin Homology 2 Domain 1107 1474 IPR015425 -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 1009 1040 - -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 898 922 - -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 576 625 - -
Vium3725g00012 1524 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Vium3725g00012 1524 SMART PTEN_C2_2 197 337 IPR014020 -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 489 512 - -
Vium3725g00012 1524 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Vium3725g00012 1524 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1176 1500 - -
Vium3725g00012 1524 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Vium3725g00012 1524 SMART it6_source 454 1522 IPR015425 -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 473 516 - -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 804 818 - -
Vium3725g00012 1524 Gene3D - 196 341 - -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 854 873 - -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 963 997 - -
Vium3725g00012 1524 Coils Coil 1475 1516 - -
Vium3725g00012 1524 PANTHER FORMIN-J 1 1511 - -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 473 488 - -
Vium3725g00012 1524 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 556 640 - -
Vium3725g00012 1524 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 793 830 - -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 848 1093 - -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 923 937 - -
Vium3725g00012 1524 MobiDBLite consensus disorder prediction 1050 1086 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3725g00012 Vium-Chr3725 149127 166452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3725g00012 671 834 FH2 protein (formin) Gene Family AT2G25050 31.217 1.10e-07 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3725g00012 - - vum:124835422 2675.2