Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3725g00010 ATGGCATTGTTCCGCAAGTTCTTCTATAAGAAGCCCCCAGATGGGCTTCTAGAAATCACTGAAAGGGTTTATGTCTTTGATTACTGCTTTACCACGGATGTTATGGAAGAAGAAGAATATAGAGTGTATCTAGGAGGAATAATTGGGCAACTTCGTGGTCACTTCCCTGATGCTTCATTTATGGTGTTCAACATGAGGGAGGGAGACTGCCAAAGCCAGATTTCAAACATTTTGTGTGACTACGATATGACTGTGATAGACTATCCTCGACAGTATGAAGGGTGCCCATTGCTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAACTGGCTTGAACTTGGGCATCACAATGTTGTCTTGATGCATTGTGAACGAGGTGGGTGGCCGTTATTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAGATGTTTACAGGGGAGCAAAAAACACTAGACATGATATACAAGCAAGCTCCTCGGGAACTTCTGCAGTTGATGTCACCATTGAATCCTTTAGCTTCACAATTGAGATATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGGGCACTTACTTTGGACTGTGTAATTATAAGACTCATTCCTAACATGGGTGGAGAGGGTGGCTGCCGTCCTATATTTAGAATATACGGGCAAGACCCTTTTATTCCTGCAGATCGAACTCCCAAAGTTCTCTTCTCAACTCCAAAAAGGAGCAAACTTGTTCGCTACTGTAGGCAGGTGGTACCCAAGTCCTTTTACCCTAATTTAATATGCTTTTTAACACCCTTTCTTTTGTTCTTGCTACCTATATTGAGATGTTCCTTCCATTATATGTTCTTACTACCCGAAATGTTTTTTTTTTTTTCATATTTGTTTCAGACTGACTGTGAACTGGTTAAGATTGACATCCACTGTCATGTTCAAGGTGATGTCGTTTTTGAGTGTATTCATCTGCACAGTGATTTAGAGCATGAAGAAATGATGTTTCGGGTGATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATTGACATACTATGGAATGCTAAAGATTGCTTCCCTAAGAATTTTAGAGTGGAGGTTCTTTTCTCAGATATGGATGCTTCAACTTCTGTTATTTCAATTGATCTGCCTCGTGTTGAGGAGAAAGATGGCCTCCCTGTTGAAGCATTTGCGAAGGTCAAGGAGATTTTCAGCAATGTGGATTGGCTAGATTCAAAGGAAGAAGTAGCAAGTGTGCTCCAACAGATCACATCTTCAAATATCCTTCTGGAAAGATTAGACTCTGGGGTTTCTGCTGCAACAAGTGACTTGCAAAAGGAGTCATCTGAAAAGTCTACAGCTGTTTTGAAGGCATACAGTGATACAAACATTCAAACTTCTGCAGTTCAGGGGAAACATTCTATATCCTCATTAGGATCGTCTTTGGATTTAGCTATGGGAAATAAGACCGAACCATTAGAGTCAAAGACATTGTCCAAAAATGACATTGAGACTCTTGAATGTTCAGGTCAAGGGAACCAACCTATTCACTCATTTGGGCTCTCAAAAGATTCAGATTCTACTAAAAGGGGGACTGAGTCATTAGAATCCAAGGAGAAGGATATTGAGTCATTAGCATCCACTGATGCAGATTCATTGGCAAAGAAGACTGATTTGTTAGGATCAAAGGAGAAAACATTTGAGTCACTCAACTCCGAGGCATTTTTGGAAAATGATAGCAGATTCAAATATGAACCTAGGCCACTTGCAGAAGTTGATAACTCATCTGGTAGTGCTCCTATGGAAAAGAACAATGACCCTCTAGAATTAAAGGTATCACCAGAAAATACCCTCAAGACTTCTGCTTCCACGAGTCAGGGGAAACAGCTTACTCCCTCATTTGGACTCATAACAGATTCTAGTTCTCCTGAAAAGCCAGTTGAATCATTAGACAATGCCAAGGTTACAACATCTATGCCTCATGTGGAGAAGTCTATGCCTCATGTGGAGAAGTCTATGCCCTCAATTGAACCATATAAGGATGCATATTCAATGACACATGACATGGGACCATTAGAAACAAAGTCATTAACGGATGGAAATTCAATAAAAGAGAAAATGGGGCAATTAGAGCAAATGGTATTGTCAGAAAATGATACCAAGAGTGTCACATCCACAGCTCAGGGGAAACAATATAGTTCTTTACTTGAACAGCCCGTTGAAGCAAGCACAATTAAAACGAAAATTGAACCTCTTGAATTGCAGGTTTCCCTCCAGCTTCCCACTCAATCAAAAATAATTTCTTCACCGGTGCGTCCAGCTGTCCGATCTGCTTCTGCTTCCACTTCTTATTTTAACTCCTTAAAAGGTTCACCTGTAGCTATCTCAAGATATCGTAGTGCACCATCAGCTCTTGGAATAACATCTGTGTTGCAGGATCATGCAGCAGTGGATATCAAAGAAGTAACTCATCCAGTGACAGTATCTCCTCCAGCTTCTGTGTTGCCTCCTTCAGACTCCAAGGTGTTAAATTCTGTAGAGCCTAGTCCCACAGCTATTCCTCCAGCATCATCATCGCCTTTGCTTCCATCTTTACCTTTAAAAACTTCAGTTGATGCTCTTAAAACCACGGAAAAAACTTTTGAATCCCTTTCTCCTGCAGCTGTAACTACACCACCTCCACCACCTCCACCACCACCACCACCACCACCATCTTCTCAATGCGATCACACTTCAAATTTGATGCAATCTAATGCTACTCAGTACCCTGAGAATACAAATGAGGGTAAGAAACCATTGGTTGGTCCTCCTCCTCCTCCCCCATCCCCTTCAATGCTCGCTCCTCCAATCCCATCATTTTCTCCAGCCCCTTCCCTTCCTGAAACATCACTTTCCACAACCCAAGATTCATGTAAAGGTCCTCCTGCACCGCCACCTCCACCTGCGCTGTCTGGGTTTCCTTCTTCATTGGGTATAAATGAATCAGTTGCTATACCTGGCCCTCCTCCTCCTCCCCCGCCTCCACCTCCTAGCCTTTCAAGTTCTGCACCACCATTAGCACCACCACCACCACCACCCCCTCCTTCCGCTTCTGCATTCCAAAATTCTTTGTCTGAGAACTCCAAAAATGGTCCTCCTGTACCCCCACCTCCACCTCCTAGCCTTCCTGGTTCAACAATATCACCTTCAGCGCCACCACCACCTCCTCCTCCAGGTTCTGCGTCCCAAAATTCTTTGTCTAGCTCCACAAATGTTCCACCTGTACCCCCACCTCCCCTTTCTGCCAATGGATTGTCAAAACCTGGAGTTCCTGGACCACCTTCTGTTCCTGGACCACCTTCTGCTCCTGGACCACCTTCTGCTCCTTTTGGTGAAAAGGGTCGTGGCCTGATGCGAGCTAATGCAAAATTTCAGTCTAGGAGGAGCAATCTGAAACCTTACCATTGGCTAAAATTAACAAGGGCGATGCAAGGAAGCTTATGGGCTGAGACACAGAAACTAGATGAATTTTGTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAAACTTTGTTCTCCGCAGCTTCCCCAGCTGCTAATGATGGAAAAGGAGGAAAGTTAAATCGCCGTGCCTCTGGGCAAAAAGTTGAGAAAGTTCAACTGATTGAGCTCAGGCGGGCCTATAACTGTGAGATCATGCTTACAAAAGTCAAAATTCCTTTGCCTGACTTGATGAGTGCTGTGCTTGCAATGGATGATACAGTATTAGATATTGATCAACTTGATAACCTCATAAAATTCTCTCCAACCAAAGAAGAGATGGAAACACTCAAGAACTATGCCGGGAATAAGGACAACTTGGGAAAGTGTGAGCAGTTCTTCTTAGAATTGATGAAAGTTCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTCTTTTAAGATGCAATTCCTGTCCCAGGTTTCAGAGCTTAAAAGAGATTTGAATATTGTGAATTCTGCATCTGAAGAGATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACTATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTGCGGCTGTTGGGTTTCGATTGGATAGTCTCCTTAAACTGACTGATACACGATCAAGAAATAACAAGATGACTCTTATGCATTATCTCTGTAAGGTGCTTGCTGAAAAACTAGGAGAACTTCTCGATTTCCATAAAGACCTAGTGAGTTTGGAGGCGGCAAGCAAGATACAATTAAAATACTTGGCAGAGGAAATGCAAGCTATCAGTAAAGGACTAGAGAAAGTAGTTCAGGAATTGACTGCATCAGAGAATGATGGACCTGTGTCAGAATACTTCTGCCAGATTCTGAAGGAATTTCTTTCTTATGCTGAATCTGAAGTAAGGTCTTTGGCTCAACTTTATGCCAACGTGGGTAGAAATGCAGATGCATTGGCTTTATACTTTGGTGAAGATCCAGCACGTTGTCCATTTGAACAAGTTGTATCTACGCTGCTCAACTTTGTGAGGTTGTTCGTAAAAGCACATGAAGAAAATTGCAAGCAGATTGAACTAGAGAGAAAAAGAGCAGAGAAGGAAGCAGAGAATGAGAAGTTGAAGCTAGCTGCTGCCAAGAAGGAGTCTGAACAGATGATGAGGACCACTATAAAGAGTGGGGATATTAAATGA 4716 0.4237 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTDVMEEEEYRVYLGGIIGQLRGHFPDASFMVFNMREGDCQSQISNILCDYDMTVIDYPRQYEGCPLLTMEMIHHFLRSGENWLELGHHNVVLMHCERGGWPLLAFMLAALLIYRKMFTGEQKTLDMIYKQAPRELLQLMSPLNPLASQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPNMGGEGGCRPIFRIYGQDPFIPADRTPKVLFSTPKRSKLVRYCRQVVPKSFYPNLICFLTPFLLFLLPILRCSFHYMFLLPEMFFFFSYLFQTDCELVKIDIHCHVQGDVVFECIHLHSDLEHEEMMFRVMFNTAFIRSNILMLNRDEIDILWNAKDCFPKNFRVEVLFSDMDASTSVISIDLPRVEEKDGLPVEAFAKVKEIFSNVDWLDSKEEVASVLQQITSSNILLERLDSGVSAATSDLQKESSEKSTAVLKAYSDTNIQTSAVQGKHSISSLGSSLDLAMGNKTEPLESKTLSKNDIETLECSGQGNQPIHSFGLSKDSDSTKRGTESLESKEKDIESLASTDADSLAKKTDLLGSKEKTFESLNSEAFLENDSRFKYEPRPLAEVDNSSGSAPMEKNNDPLELKVSPENTLKTSASTSQGKQLTPSFGLITDSSSPEKPVESLDNAKVTTSMPHVEKSMPHVEKSMPSIEPYKDAYSMTHDMGPLETKSLTDGNSIKEKMGQLEQMVLSENDTKSVTSTAQGKQYSSLLEQPVEASTIKTKIEPLELQVSLQLPTQSKIISSPVRPAVRSASASTSYFNSLKGSPVAISRYRSAPSALGITSVLQDHAAVDIKEVTHPVTVSPPASVLPPSDSKVLNSVEPSPTAIPPASSSPLLPSLPLKTSVDALKTTEKTFESLSPAAVTTPPPPPPPPPPPPPSSQCDHTSNLMQSNATQYPENTNEGKKPLVGPPPPPPSPSMLAPPIPSFSPAPSLPETSLSTTQDSCKGPPAPPPPPALSGFPSSLGINESVAIPGPPPPPPPPPPSLSSSAPPLAPPPPPPPPSASAFQNSLSENSKNGPPVPPPPPPSLPGSTISPSAPPPPPPPGSASQNSLSSSTNVPPVPPPPLSANGLSKPGVPGPPSVPGPPSAPGPPSAPFGEKGRGLMRANAKFQSRRSNLKPYHWLKLTRAMQGSLWAETQKLDEFCRAPEFDMSELETLFSAASPAANDGKGGKLNRRASGQKVEKVQLIELRRAYNCEIMLTKVKIPLPDLMSAVLAMDDTVLDIDQLDNLIKFSPTKEEMETLKNYAGNKDNLGKCEQFFLELMKVPRVESKLRVFSFKMQFLSQVSELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGAAVGFRLDSLLKLTDTRSRNNKMTLMHYLCKVLAEKLGELLDFHKDLVSLEAASKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSEYFCQILKEFLSYAESEVRSLAQLYANVGRNADALALYFGEDPARCPFEQVVSTLLNFVRLFVKAHEENCKQIELERKRAEKEAENEKLKLAAAKKESEQMMRTTIKSGDIK 1571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3725g00010 1571 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 970 984 - -
Vium3725g00010 1571 Pfam Formin Homology 2 Domain 1154 1521 IPR015425 -
Vium3725g00010 1571 Coils Coil 1522 1563 - -
Vium3725g00010 1571 Gene3D Formin, FH2 domain 1166 1562 IPR042201 -
Vium3725g00010 1571 SMART it6_source 501 1569 IPR015425 -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 840 877 - -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 1010 1044 - -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 901 920 - -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 1056 1087 - -
Vium3725g00010 1571 PANTHER FORMIN-J 1 1558 - -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 1097 1133 - -
Vium3725g00010 1571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 307 385 IPR035892 -
Vium3725g00010 1571 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Vium3725g00010 1571 ProSiteProfiles C2 tensin-type domain profile. 199 385 IPR014020 -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 945 969 - -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 520 535 - -
Vium3725g00010 1571 Gene3D - 299 388 - -
Vium3725g00010 1571 Gene3D - 196 264 - -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 895 1140 - -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 1552 1571 - -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 603 687 - -
Vium3725g00010 1571 Pfam C2 domain of PTEN tumour-suppressor protein 200 383 IPR014020 -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 921 940 - -
Vium3725g00010 1571 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1223 1547 - -
Vium3725g00010 1571 SMART PTEN_C2_2 197 384 IPR014020 -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 623 672 - -
Vium3725g00010 1571 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1147 1547 IPR015425 -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 520 563 - -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 851 865 - -
Vium3725g00010 1571 MobiDBLite consensus disorder prediction 536 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3725g00010 Vium-Chr3725 149127 166453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3725g00010 1124 1549 FH2 protein (formin) Gene Family AT3G32400 71.897 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3725g00010 - - vum:124835422 2773.81