Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3725g00009 ATGGCATTGTTCCGCAAGTTCTTCTATAAGAAGCCCCCAGATGGGCTTCTAGAAATCACTGAAAGGGTTTATGTCTTTGATTACTGCTTTACCACGGATGTTATGGAAGAAGAAGAATATAGAGTGTATCTAGGAGGAATAATTGGGCAACTTCGTGGTCACTTCCCTGATGCTTCATTTATGGTGTTCAACATGAGGGAGGGAGACTGCCAAAGCCAGATTTCAAACATTTTGTGTGACTACGATATGACTGTGATAGACTATCCTCGACAGTATGAAGGGTGCCCATTGCTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAACTGGCTTGAACTTGGGCATCACAATGTTGTCTTGATGCATTGTGAACGAGGTGGGTGGCCGTTATTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAGATGTTTACAGGGGAGCAAAAAACACTAGACATGATATACAAGCAAGCTCCTCGGGAACTTCTGCAGTTGATGTCACCATTGAATCCTTTAGCTTCACAATTGAGATATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGGGCACTTACTTTGGACTGTGTAATTATAAGACTCATTCCTAACATGGGTGGAGAGGGTGGCTGCCGTCCTATATTTAGAATATACGGGCAAGACCCTTTTATTCCTGCAGATCGAACTCCCAAAGTTCTCTTCTCAACTCCAAAAAGGAGCAAACTTGTTCGCTACTGTAGGCAGGTGGTACCCAAGTCCTTTTACCCTAATTTAATATGCTTTTTAACACCCTTTCTTTTGTTCTTGCTACCTATATTGAGATGTTCCTTCCATTATATGTTCTTACTACCCGAAATGTTTTTTTTTTTTTCATATTTGTTTCAGACTGACTGTGAACTGGTTAAGATTGACATCCACTGTCATGTTCAAGGTGATGTCGTTTTTGAGTGTATTCATCTGCACAGTGATTTAGAGCATGAAGAAATGATGTTTCGGGTGATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATTGACATACTATGGAATGCTAAAGATTGCTTCCCTAAGAATTTTAGAGTGGAGGTTCTTTTCTCAGATATGGATGCTTCAACTTCTGTTATTTCAATTGATCTGCCTCGTGTTGAGGAGAAAGATGGCCTCCCTGTTGAAGCATTTGCGAAGGTCAAGGAGATTTTCAGCAATGTGGATTGGCTAGATTCAAAGGAAGAAGTAGCAAGTGTGCTCCAACAGATCACATCTTCAAATATCCTTCTGGAAAGATTAGACTCTGGGGTTTCTGCTGCAACAAGTGACTTGCAAAAGGAGTCATCTGAAAAGTCTACAGCTGTTTTGAAGGCATACAGTGATACAAACATTCAAACTTCTGCAGTTCAGGGGAAACATTCTATATCCTCATTAGGATCGTCTTTGGATTTAGCTATGGGAAATAAGACCGAACCATTAGAGTCAAAGACATTGTCCAAAAATGACATTGAGACTCTTGAATGTTCAGGTCAAGGGAACCAACCTATTCACTCATTTGGGCTCTCAAAAGATTCAGATTCTACTAAAAGGGGGACTGAGTCATTAGAATCCAAGGAGAAGGATATTGAGTCATTAGCATCCACTGATGCAGATTCATTGGCAAAGAAGACTGATTTGTTAGGATCAAAGGAGAAAACATTTGAGTCACTCAACTCCGAGGCATTTTTGGAAAATGATAGCAGATTCAAATATGAACCTAGGCCACTTGCAGAAGTTGATAACTCATCTGGTAGTGCTCCTATGGAAAAGAACAATGACCCTCTAGAATTAAAGGTATCACCAGAAAATACCCTCAAGACTTCTGCTTCCACGAGTCAGGGGAAACAGCTTACTCCCTCATTTGGACTCATAACAGATTCTAGTTCTCCTGAAAAGCCAGTTGAATCATTAGACAATGCCAAGGTTACAACATCTATGCCTCATGTGGAGAAGTCTATGCCTCATGTGGAGAAGTCTATGCCCTCAATTGAACCATATAAGGATGCATATTCAATGACACATGACATGGGACCATTAGAAACAAAGTCATTAACGGATGGAAATTCAATAAAAGAGAAAATGGGGCAATTAGAGCAAATGGTATTGTCAGAAAATGATACCAAGAGTGTCACATCCACAGCTCAGGGGAAACAATATAGTTCTTTACTTGAACAGCCCGTTGAAGCAAGCACAATTAAAACGAAAATTGAACCTCTTGAATTGCAGGTTTCCCTCCAGCTTCCCACTCAATCAAAAATAATTTCTTCACCGGTGCGTCCAGCTGTCCGATCTGCTTCTGCTTCCACTTCTTATTTTAACTCCTTAAAAGGTTCACCTGTAGCTATCTCAAGATATCGTAGTGCACCATCAGCTCTTGGAATAACATCTGTGTTGCAGGATCATGCAGCAGTGGATATCAAAGAAGTAACTCATCCAGTGACAGTATCTCCTCCAGCTTCTGTGTTGCCTCCTTCAGACTCCAAGGTGTTAAATTCTGTAGAGCCTAGTCCCACAGCTATTCCTCCAGCATCATCATCGCCTTTGCTTCCATCTTTACCTTTAAAAACTTCAGTTGATGCTCTTAAAACCACGGAAAAAACTTTTGAATCCCTTTCTCCTGCAGCTGTAACTACACCACCTCCACCACCTCCACCACCACCACCACCACCACCATCTTCTCAATGCGATCACACTTCAAATTTGATGCAATCTAATGCTACTCAGTACCCTGAGAATACAAATGAGGGTAAGAAACCATTGGTTGGTCCTCCTCCTCCTCCCCCATCCCCTTCAATGCTCGCTCCTCCAATCCCATCATTTTCTCCAGCCCCTTCCCTTCCTGAAACATCACTTTCCACAACCCAAGATTCATGTAAAGGTCCTCCTGCACCGCCACCTCCACCTGCGCTGTCTGGGTTTCCTTCTTCATTGGGTATAAATGAATCAGTTGCTATACCTGGCCCTCCTCCTCCTCCCCCGCCTCCACCTCCTAGCCTTTCAAGTTCTGCACCACCATTAGCACCACCACCACCACCACCCCCTCCTTCCGCTTCTGCATTCCAAAATTCTTTGTCTGAGAACTCCAAAAATGGTCCTCCTGTACCCCCACCTCCACCTCCTAGCCTTCCTGGTTCAACAATATCACCTTCAGCGCCACCACCACCTCCTCCTCCAGGTTCTGCGTCCCAAAATTCTTTGTCTAGCTCCACAAATGTTCCACCTGTACCCCCACCTCCCCTTTCTGCCAATGGATTGTCAAAACCTGGAGTTCCTGGACCACCTTCTGTTCCTGGACCACCTTCTGCTCCTGGACCACCTTCTGCTCCTTTTGGTGAAAAGGGTCGTGGCCTGATGCGAGCTAATGCAAAATTTCAGTCTAGGAGGAGCAATCTGAAACCTTACCATTGGCTAAAATTAACAAGGGCGATGCAAGGAAGCTTATGGGCTGAGACACAGAAACTAGATGAATTTTGTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAAACTTTGTTCTCCGCAGCTTCCCCAGCTGCTAATGATGGAAAAGGAGGAAAGTTAAATCGCCGTGCCTCTGGGCAAAAAGTTGAGAAAGTTCAACTGATTGAGCTCAGGCGGGCCTATAACTGTGAGATCATGCTTACAAAAGTCAAAATTCCTTTGCCTGACTTGATGAGTGCTGTGCTTGCAATGGATGATACAGTATTAGATATTGATCAACTTGATAACCTCATAAAATTCTCTCCAACCAAAGAAGAGATGGAAACACTCAAGAACTATGCCGGGAATAAGGACAACTTGGGAAAGTGTGAGCAGTTCTTCTTAGAATTGATGAAAGTTCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTCTTTTAAGATGCAATTCCTGTCCCAGGTTTCAGAGCTTAAAAGAGATTTGAATATTGTGAATTCTGCATCTGAAGAGATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACTATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTGCGGCTGTTGGGTTTCGATTGGATAGTCTCCTTAAACTGACTGATACACGATCAAGAAATAACAAGATGACTCTTATGCATTATCTCTGTAAGGTGCTTGCTGAAAAACTAGGAGAACTTCTCGATTTCCATAAAGACCTAGTGAGTTTGGAGGCGGCAAGCAAGATACAATTAAAATACTTGGCAGAGGAAATGCAAGCTATCAGTAAAGGACTAGAGAAAGTAGTTCAGGAATTGACTGCATCAGAGAATGATGGACCTGTGTCAGAATACTTCTGCCAGGGTAGAAATGCAGATGCATTGGCTTTATACTTTGGTGAAGATCCAGCACGTTGTCCATTTGAACAAGTTGTATCTACGCTGCTCAACTTTGTGAGGTTGTTCGTAAAAGCACATGAAGAAAATTGCAAGCAGATTGAACTAGAGAGAAAAAGAGCAGAGAAGGAAGCAGAGAATGAGAAGTTGAAGCTAGCTGCTGCCAAGAAGGAGTCTGAACAGATGATGAGGACCACTATAAAGAGTGGGGATATTAAATGA 4647 0.4244 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTDVMEEEEYRVYLGGIIGQLRGHFPDASFMVFNMREGDCQSQISNILCDYDMTVIDYPRQYEGCPLLTMEMIHHFLRSGENWLELGHHNVVLMHCERGGWPLLAFMLAALLIYRKMFTGEQKTLDMIYKQAPRELLQLMSPLNPLASQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPNMGGEGGCRPIFRIYGQDPFIPADRTPKVLFSTPKRSKLVRYCRQVVPKSFYPNLICFLTPFLLFLLPILRCSFHYMFLLPEMFFFFSYLFQTDCELVKIDIHCHVQGDVVFECIHLHSDLEHEEMMFRVMFNTAFIRSNILMLNRDEIDILWNAKDCFPKNFRVEVLFSDMDASTSVISIDLPRVEEKDGLPVEAFAKVKEIFSNVDWLDSKEEVASVLQQITSSNILLERLDSGVSAATSDLQKESSEKSTAVLKAYSDTNIQTSAVQGKHSISSLGSSLDLAMGNKTEPLESKTLSKNDIETLECSGQGNQPIHSFGLSKDSDSTKRGTESLESKEKDIESLASTDADSLAKKTDLLGSKEKTFESLNSEAFLENDSRFKYEPRPLAEVDNSSGSAPMEKNNDPLELKVSPENTLKTSASTSQGKQLTPSFGLITDSSSPEKPVESLDNAKVTTSMPHVEKSMPHVEKSMPSIEPYKDAYSMTHDMGPLETKSLTDGNSIKEKMGQLEQMVLSENDTKSVTSTAQGKQYSSLLEQPVEASTIKTKIEPLELQVSLQLPTQSKIISSPVRPAVRSASASTSYFNSLKGSPVAISRYRSAPSALGITSVLQDHAAVDIKEVTHPVTVSPPASVLPPSDSKVLNSVEPSPTAIPPASSSPLLPSLPLKTSVDALKTTEKTFESLSPAAVTTPPPPPPPPPPPPPSSQCDHTSNLMQSNATQYPENTNEGKKPLVGPPPPPPSPSMLAPPIPSFSPAPSLPETSLSTTQDSCKGPPAPPPPPALSGFPSSLGINESVAIPGPPPPPPPPPPSLSSSAPPLAPPPPPPPPSASAFQNSLSENSKNGPPVPPPPPPSLPGSTISPSAPPPPPPPGSASQNSLSSSTNVPPVPPPPLSANGLSKPGVPGPPSVPGPPSAPGPPSAPFGEKGRGLMRANAKFQSRRSNLKPYHWLKLTRAMQGSLWAETQKLDEFCRAPEFDMSELETLFSAASPAANDGKGGKLNRRASGQKVEKVQLIELRRAYNCEIMLTKVKIPLPDLMSAVLAMDDTVLDIDQLDNLIKFSPTKEEMETLKNYAGNKDNLGKCEQFFLELMKVPRVESKLRVFSFKMQFLSQVSELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGAAVGFRLDSLLKLTDTRSRNNKMTLMHYLCKVLAEKLGELLDFHKDLVSLEAASKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSEYFCQGRNADALALYFGEDPARCPFEQVVSTLLNFVRLFVKAHEENCKQIELERKRAEKEAENEKLKLAAAKKESEQMMRTTIKSGDIK 1548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3725g00009 1548 Gene3D - 299 388 - -
Vium3725g00009 1548 Gene3D - 196 264 - -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 970 984 - -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 840 877 - -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 901 920 - -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 1010 1044 - -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 1056 1087 - -
Vium3725g00009 1548 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 1097 1133 - -
Vium3725g00009 1548 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 307 385 IPR035892 -
Vium3725g00009 1548 ProSiteProfiles C2 tensin-type domain profile. 199 385 IPR014020 -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 1527 1548 - -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 945 969 - -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 520 535 - -
Vium3725g00009 1548 Pfam C2 domain of PTEN tumour-suppressor protein 200 383 IPR014020 -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 895 1140 - -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 603 687 - -
Vium3725g00009 1548 Coils Coil 1499 1540 - -
Vium3725g00009 1548 PANTHER FORMIN-J 1 1535 - -
Vium3725g00009 1548 Gene3D Formin, FH2 domain 1143 1509 IPR042201 -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 921 940 - -
Vium3725g00009 1548 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1147 1524 IPR015425 -
Vium3725g00009 1548 Pfam Formin Homology 2 Domain 1154 1464 IPR015425 -
Vium3725g00009 1548 SMART PTEN_C2_2 197 384 IPR014020 -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 623 672 - -
Vium3725g00009 1548 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 520 563 - -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 851 865 - -
Vium3725g00009 1548 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1223 1524 - -
Vium3725g00009 1548 SMART it6_source 501 1546 IPR015425 -
Vium3725g00009 1548 MobiDBLite consensus disorder prediction 536 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3725g00009 Vium-Chr3725 149127 166454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3725g00009 718 881 FH2 protein (formin) Gene Family AT2G25050 31.217 7.82e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3725g00009 - - vum:124835422 2719.11