Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3725g00007 ATGCTCGTTCAAGTCCTCAACACAGCAGTCATAATGGATCTAAAGGTGGAAAGTCTTAAATCTGAGTTAAAGAGAGTGAGAGAAGAGAATAACACTCTAAGAGTGATGTTTGAAGTTCTAAGCAGCAAGTACACAAAGCTTGAGTCCCATCTTCAAGAGATAAACAAGGAACAACACAAGGGCATGAGTTCAAATCAAATAGGATCAGTAACCGAAGCTATCTTGGATGTGAACAAGAGACGGAGACTAGAGTTTCCCACAGCAAAAAAACCACTACAAATCTTTGTCAGAACACACCCCATGGATGATAGTTTGATAGTAAAAGATGGATATCAGTGGAGAAAGTATGGACAAAAGGTCACCAAAGACAATGCTTCACCAAGAGCTTACTTTAGGTGCTCCATGGCTCCCATTTGCCCAGCCAAAAAGAAGGTGCAAAGATGTTTACATGATAAGTCTATCCTTGTTGCAACTTATGATGGAGAGCACAACCATGGTGCTCTTCATGAGCCATCTTCATCCACACCTAGAGGCTCATCAGTGGCCAACCAGTTGCCTAGCATAGCAAATGACAAAGAAGCAATGAACATTTTGGCTCTTTCTGGATTGTCTCAAACAGATAGAAGACATGGTGAAGAAGTAATGAATCAACATAACTATGACACCAACATCAAAGTTGAAGAATATGTAAGTTCTCTAATCAAAGATCCTGACTTCACCATGTCATTAGCTGAAGCAGTTGCCCGCACCATCACTGGCGACCTCAAGCAGCAAGATATAAACCTCAATTTGAATATTCCGGAAGAGTGA 810 0.4099 MLVQVLNTAVIMDLKVESLKSELKRVREENNTLRVMFEVLSSKYTKLESHLQEINKEQHKGMSSNQIGSVTEAILDVNKRRRLEFPTAKKPLQIFVRTHPMDDSLIVKDGYQWRKYGQKVTKDNASPRAYFRCSMAPICPAKKKVQRCLHDKSILVATYDGEHNHGALHEPSSSTPRGSSVANQLPSIANDKEAMNILALSGLSQTDRRHGEEVMNQHNYDTNIKVEEYVSSLIKDPDFTMSLAEAVARTITGDLKQQDINLNLNIPEE 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3725g00007 269 Pfam WRKY DNA -binding domain 108 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3725g00007 269 SUPERFAMILY WRKY DNA-binding domain 101 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3725g00007 269 Gene3D WRKY domain 93 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3725g00007 269 SMART WRKY_cls 107 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3725g00007 269 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 16 254 IPR044810 GO:0003700
Vium3725g00007 269 ProSiteProfiles WRKY domain profile. 102 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3725g00007 269 Coils Coil 9 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3725g00007 Vium-Chr3725 146172 148432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3725g00007 1 259 WRKY Transcription Factor Family AT1G80840 35.570 3.15e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium3725g00007 WRKY 2.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3725g00007 - - gmx:100170679 422.165