Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3725g00006 ATGGAACCAACATGCTTGGATACTTCACTCAATCTCAACGTTGATCCTTCTTCTGTTCACACGGATATGGTGTTGGAGGAAGAGTTGCAGAGGCTGAGACGTGAGAACAAGAGGTTGACTGAGATGTTGACCGACTTGTGTGACAGCTACATGGTTTTGCAGAAGCAACTGACCCAATTGAAGAACACAAATTTTGAGCAAGACCAACTCGAATCACGCAAGCGAAAAGCAGAGAGCGAGTGTTGTACCAACAAATTTGGTGTTGTTAACAACAACAATGTTGAGTGCAGCTCCATAACAGAGGATTCCTTCAAAAGGTACAAGGATTTCAGCTCCTCCCCAAAGGTTTCCAAGGTTCTTGTAAAGACAGAAGCTTCTAATAACAGTTTATATGTAATGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTGACCAGGGATAACCCTTCTCCTAGAGCTTACTTCAGGTGCTCCTTTGCCCCAAGCTGCCCAGTTAAAAAGAAGGTGCAAAGGAGTTTAGAAGACCCTACAATACTTGTTACAACATATGAAGGAGAGCATAATCATGGTCATCAAAGAGGTGAAATTGAAGGAGGAAAAGGGTCAAATCCAGTTTCTTCACCAACACCCACAATTGGAAGTGCTTGCCCTACTGTAACGCTTGATTTGGTCAAATCAGGATTCTTTGAAACTGCCCAAAAGTCATCTGTCCAACAATTTTTGGTTCAACAAATGGCTACTTCTTTGACAAGGGATCCCAATTTCACCACAGCGCTTGCCACTGCCATTTCAGGAAAAATTCTACAGGCCAAATGGTGA 822 0.427 MEPTCLDTSLNLNVDPSSVHTDMVLEEELQRLRRENKRLTEMLTDLCDSYMVLQKQLTQLKNTNFEQDQLESRKRKAESECCTNKFGVVNNNNVECSSITEDSFKRYKDFSSSPKVSKVLVKTEASNNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSLEDPTILVTTYEGEHNHGHQRGEIEGGKGSNPVSSPTPTIGSACPTVTLDLVKSGFFETAQKSSVQQFLVQQMATSLTRDPNFTTALATAISGKILQAKW 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3725g00006 273 FunFam WRKY transcription factor 40 117 194 - -
Vium3725g00006 273 Coils Coil 22 49 - -
Vium3725g00006 273 SMART WRKY_cls 132 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3725g00006 273 Gene3D WRKY domain 115 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3725g00006 273 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 23 268 IPR044810 GO:0003700
Vium3725g00006 273 MobiDBLite consensus disorder prediction 187 212 - -
Vium3725g00006 273 Pfam WRKY DNA -binding domain 134 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3725g00006 273 ProSiteProfiles WRKY domain profile. 127 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3725g00006 273 Coils Coil 60 80 - -
Vium3725g00006 273 SUPERFAMILY WRKY DNA-binding domain 130 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3725g00006 Vium-Chr3725 115337 116990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3725g00006 4 270 WRKY Transcription Factor Family AT1G80840 45.205 6.26e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium3725g00006 WRKY 5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3725g00006 - - gmx:100810978 413.69