Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3722g00006 ATGGAGTGCAATAAGGATGAGGCTACCAGGGCTAAAGAAATTGCGGAGAGGAAGTTTGCTGCAAAGGATATATCAGGTGCAAAGAAATTTGCTGTGAAGGCCCTAAATCTATATCCTGAACTTGAGGGTATTTCTCAAATGTTAGCAACACTTGATGTATATATTTCTGCTGAGAATAAAGCAAACGGAGAAGCAGATTGGTACGGTGTACTCGGTGTGGATTCCCTTGCTGATGATGATACAGTAAGGAGACAATACAGGAAGTTAGCTCTCATGCTTCACCCTGATAAGAACAAGTCCATCGGTGCTGATGGGGCCTTTAAACTTGTGTCAGAGGCATGGAGTTTACTGTCAGATAGGGCTAAAAGAGCAGCATATGATAAGAGAAGTGGAAAAGAACGGAAAGTTTCTGCCAAGTTTGGAGGTTCATCAGCACAAAAAAACACTAATGGTAGTTACAATTTTACTAAGACTACCCCTTCAGGTGCAACTGCTCAGAAGAATACCGCAAAAGAACACACTTCATCTTCTGCTCATAAGTCAAAATCAAATACATTTTGGACTGTTTGCAATAGGTGCAAAATGCAGTACGAGTATCTTAGAGTTTATCTTAACCTTAAGCTCTTGTGTCCTTGCTGCCGTACAGCATTTGTTGCTGTAGAGACTGCTCCTCCACCGGCAAGCGGTATTAGGCCTGCAACTCAATGGAATTTTTCACAGAAGAAGCAAACTTCCAATCGCCAAGTACCTAGTAAAAGCAAACCAAATGCCGGAAAGCATGACATGGCAGCTCCAAATGTTGGAGCAGGGTCTTATAATAATACTGAAACAGCCAGTTTTCAATGGGCTCCATTCTCAAAATCATCTGGTGTTTCCAACGTTGCTCAAGCTGCAAGTGTGGTTCAGCAGGCATATGACAAAGTGAGGCGAGATCGTGAGGAGGCACAAGCGGCTAGCAAAAGGGAAGAAGCCTTAAAAAGGAAGCAGCATGCTTCTAAAAAGGGTTACCATAATCCTGCTAAGAAAAGAAGAGGGGGCACGGAGGATGCAAGTGCAAGTGGTGGTAAGGAAAACCGAATGGGTGGGGGAACAAACCCATCTAAACAGGCTAATTTTGAGTATAATAGGGTTAATGGAATCAACAAGACCGACAGTGTGGGGGATATTTCCCCAGTTGAACTTCGGAATCTTCTTATGGAGAAAGCTAGAAAAGAAATTAGCAATAAACTCAGGGAAAATCAGTCAAATGCTGTTGATAAAACAGTGATGAAAGACAGTGGAAATAACTTCTATAAAGTGAACGATAAAGGAGAAAAAATCCTAAAAAATTCTGAAATGTGTGCTCGAGATAACATTGCCATCAAATCGTTTGCAGGCTCTACAATCGCTAAAGGTAATAGAAAATTTCTAGAAACAACAGCTATAGAAGTACCAGATCCTGACTTCCATGATTTTTACAAAGATCGAACTGAAGTATCTTTCACTCAAAATCAAGTATGGGCTGTATATGATAATGATGATGGGATGCCTCGATGTTATGCAATGATTTGTGGCATCATCTCCCTGAATCCATTCAAGATAAAGATCAGTTGGCTCAACCCAAACACCAACAGTAAACTGGACCCCATAAAATGGGTTGCTTCAGGATTTTCAAAAATTTGTGGTGATTTCAGATTGAGCAGACCTGAAACCTGTAGCTCGCCCAACTTTTTCTCCCACAAGGTTAGGTGGAGAACAGGTGCTGATGGGGCTATTTGTATATATCCCAGGAAGGGGGATGTTTGGGCCATATATAGGAATTGGTCTCCTGACTGGGATGAGCTAACACCAGATGAGGTTATACACAAGTTTGATGTGGTTGAAGTACTTGAGGATTTTATTGAAGGGCATGGCATAGATGTTATCCCACTGGTCAAAGTGGCTGGATTCAGGACGGTATTTCACCACCACTTAGATCCAACAGAAATCAGGATCATTCCGATGGAAGAGATGTTTCGATTCTCTCATCAAATACCTTCATATGTACTCACAGGTCAAGAAGCTCCACATGCTCCAAAGGGTTGA 2064 0.4181 MECNKDEATRAKEIAERKFAAKDISGAKKFAVKALNLYPELEGISQMLATLDVYISAENKANGEADWYGVLGVDSLADDDTVRRQYRKLALMLHPDKNKSIGADGAFKLVSEAWSLLSDRAKRAAYDKRSGKERKVSAKFGGSSAQKNTNGSYNFTKTTPSGATAQKNTAKEHTSSSAHKSKSNTFWTVCNRCKMQYEYLRVYLNLKLLCPCCRTAFVAVETAPPPASGIRPATQWNFSQKKQTSNRQVPSKSKPNAGKHDMAAPNVGAGSYNNTETASFQWAPFSKSSGVSNVAQAASVVQQAYDKVRRDREEAQAASKREEALKRKQHASKKGYHNPAKKRRGGTEDASASGGKENRMGGGTNPSKQANFEYNRVNGINKTDSVGDISPVELRNLLMEKARKEISNKLRENQSNAVDKTVMKDSGNNFYKVNDKGEKILKNSEMCARDNIAIKSFAGSTIAKGNRKFLETTAIEVPDPDFHDFYKDRTEVSFTQNQVWAVYDNDDGMPRCYAMICGIISLNPFKIKISWLNPNTNSKLDPIKWVASGFSKICGDFRLSRPETCSSPNFFSHKVRWRTGADGAICIYPRKGDVWAIYRNWSPDWDELTPDEVIHKFDVVEVLEDFIEGHGIDVIPLVKVAGFRTVFHHHLDPTEIRIIPMEEMFRFSHQIPSYVLTGQEAPHAPKG 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3722g00006 687 Pfam DnaJ domain 66 127 IPR001623 -
Vium3722g00006 687 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Vium3722g00006 687 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Vium3722g00006 687 Gene3D DnaJ domain 63 185 IPR036869 -
Vium3722g00006 687 MobiDBLite consensus disorder prediction 139 178 - -
Vium3722g00006 687 MobiDBLite consensus disorder prediction 311 371 - -
Vium3722g00006 687 MobiDBLite consensus disorder prediction 141 172 - -
Vium3722g00006 687 MobiDBLite consensus disorder prediction 311 329 - -
Vium3722g00006 687 SMART dnaj_3 65 122 IPR001623 -
Vium3722g00006 687 Coils Coil 305 328 - -
Vium3722g00006 687 MobiDBLite consensus disorder prediction 232 253 - -
Vium3722g00006 687 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vium3722g00006 687 PRINTS DnaJ domain signature 122 141 IPR001623 -
Vium3722g00006 687 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vium3722g00006 687 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vium3722g00006 687 MobiDBLite consensus disorder prediction 224 270 - -
Vium3722g00006 687 PANTHER BNAC03G44070D PROTEIN 1 687 - -
Vium3722g00006 687 CDD DnaJ 66 119 IPR001623 -
Vium3722g00006 687 Pfam Domain of unknown function (DUF3444) 473 680 IPR024593 -
Vium3722g00006 687 SUPERFAMILY Chaperone J-domain 59 126 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3722g00006 Vium-Chr3722 63408 67982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3722g00006 4 229 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.475 8.87e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3722g00006 - - gmx:100816712 1130.93