Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3722g00001 ATGACTGATAGTATATCTGAATACCTCATTTCTGAACTCTCCACTAATGGAGCTGATGGCACAAATGACGCACCTGCTATAAAAGAAGCAGATATTGGACTTTCCATGGGAATAAAAGGCACTGAAGTGGCAAAGGAGAGCTCATATATTGTTATCTTTGACGATAATTTCTCTTATGTGGTTACAGTAATCAAATGGGGAAGATGTGTGTACAAAAACATTCAGAAGTTCATTCAGTTTCAGCTGATAGTTAATGTTGCTGCACTGGTCATAAACTTTGTAGCTGCAGTTTCTTCATGTAAAGTGCCTCTTACAGCAGTCCAACTTTTGTTGGTAAACCTGATAATGGATACCCTTGGAGCTTTGGCTTTAGCCACCAAGGAACCTACTGATGATCTCATGAAGATGCCACCTGTAGGTAGAGTTGAGCCACTGATAACTAGAGTTATGTGGAGGAACCTGATTTCACAGGCATTGTACCAGGTTATGATGTTGCTAGTTTTAGAATTCAGGGGAAGATCAATCTTTGATGTTACTGAGAAGGTGAAGAACACGATTATCTTCAATTCTTTTGTACTCTACCAAGTGTTCAATGAGTTCAATGCAAGGGAGCTGGAGAAGAAGAACATATTTAAGGGACTTGGTAAGAATACGTTGTTCATTGTAATTGTGAGCCTAACTGTTGTTCTTCAGCTAGTGATGGTTGAGTTTCTGAAAAAGTTTGCCAATACTGAGAGATTGACTTGGGAGCAATGGGATGTTTGTGTTAGCATTGGAGCTTTGTCTTGGCCAATTGGTGTGCTGGTGAAGTGTATCCCAGTTGAACGTAAGAAGTAG 837 0.399 MTDSISEYLISELSTNGADGTNDAPAIKEADIGLSMGIKGTEVAKESSYIVIFDDNFSYVVTVIKWGRCVYKNIQKFIQFQLIVNVAALVINFVAAVSSCKVPLTAVQLLLVNLIMDTLGALALATKEPTDDLMKMPPVGRVEPLITRVMWRNLISQALYQVMMLLVLEFRGRSIFDVTEKVKNTIIFNSFVLYQVFNEFNARELEKKNIFKGLGKNTLFIVIVSLTVVLQLVMVEFLKKFANTERLTWEQWDVCVSIGALSWPIGVLVKCIPVERKK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3722g00001 278 FunFam Calcium-transporting ATPase 34 276 - -
Vium3722g00001 278 NCBIfam HAD-IC family P-type ATPase 19 100 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3722g00001 278 PRINTS P-type cation-transporting ATPase superfamily signature 41 53 - -
Vium3722g00001 278 PRINTS P-type cation-transporting ATPase superfamily signature 17 36 - -
Vium3722g00001 278 PANTHER CATION TRANSPORTING ATPASE 19 274 - -
Vium3722g00001 278 SUPERFAMILY Calcium ATPase, transmembrane domain M 67 275 IPR023298 -
Vium3722g00001 278 Gene3D - 29 275 - -
Vium3722g00001 278 PRINTS H+-transporting ATPase (proton pump) signature 17 33 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3722g00001 278 PRINTS H+-transporting ATPase (proton pump) signature 49 74 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3722g00001 278 Pfam Cation transporting ATPase, C-terminus 102 271 IPR006068 -
Vium3722g00001 278 SUPERFAMILY HAD-like 19 79 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3722g00001 Vium-Chr3722 10961 13860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3722g00001 18 278 Primary Pumps ATPases AT3G22910 76.628 1.56e-132 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3722g00001 K01537 - vum:124835412 542.347